Chlorine in PDB 6mqp: Structure of Hiv-1 Ca T210K

The structure of Structure of Hiv-1 Ca T210K, PDB code: 6mqp was solved by S.S.Smaga, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.43 / 3.30
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	91.767, 91.767, 57.216, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 24.1

The structure of Structure of Hiv-1 Ca T210K also contains other interesting chemical elements:

Iodine

(I)

2 atoms

The binding sites of Chlorine atom in the Structure of Hiv-1 Ca T210K (pdb code 6mqp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Hiv-1 Ca T210K, PDB code: 6mqp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Hiv-1 Ca T210K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hiv-1 Ca T210K within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:67.3 occ:1.00 HA A:PRO38 3.5 90.3 1.0 HG22 A:ILE37 3.5 88.2 1.0 HB2 A:SER41 3.8 90.8 1.0 HG A:SER41 3.8 1.0 1.0 HB3 A:SER41 3.9 90.8 1.0 HD13 A:ILE135 3.9 70.5 1.0 HG3 A:PRO38 4.2 78.6 1.0 CB A:SER41 4.2 75.1 1.0 CA A:PRO38 4.3 74.8 1.0 CG2 A:ILE37 4.4 73.0 1.0 OG A:SER41 4.4 86.1 1.0 HG21 A:ILE37 4.5 88.2 1.0 HB3 A:PRO38 4.5 74.8 1.0 HG21 A:ILE135 4.5 73.5 1.0 N A:PRO38 4.6 78.8 1.0 O A:ILE37 4.7 75.3 1.0 HD11 A:ILE135 4.8 70.5 1.0 CD1 A:ILE135 4.8 58.3 1.0 HD3 A:PRO38 4.8 82.5 1.0 HG23 A:ILE37 4.8 88.2 1.0 CB A:PRO38 4.8 61.8 1.0 CG A:PRO38 4.8 65.0 1.0 C A:ILE37 4.8 72.2 1.0

Chlorine binding site 2 out of 2 in the Structure of Hiv-1 Ca T210K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hiv-1 Ca T210K within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:80.8 occ:1.00 HG2 A:LYS70 3.5 80.7 1.0 HH A:TYR130 3.5 0.7 1.0 OH A:TYR130 3.6 83.4 1.0 OD1 A:ASN53 3.7 49.8 1.0 HE3 A:LYS70 4.0 94.5 1.0 HD12 A:LEU56 4.1 78.1 1.0 HD13 A:ILE73 4.1 78.9 1.0 HG22 A:THR107 4.4 98.7 1.0 CG A:LYS70 4.4 66.8 1.0 HG23 A:THR107 4.4 98.7 1.0 HG21 A:THR107 4.4 98.7 1.0 HD13 A:LEU56 4.5 78.1 1.0 HG21 A:ILE73 4.5 79.2 1.0 HD12 A:ILE73 4.5 78.9 1.0 HA A:LYS70 4.6 63.3 1.0 CG A:ASN53 4.6 56.2 1.0 HB1 A:ALA105 4.6 78.2 1.0 CG2 A:THR107 4.6 81.7 1.0 HG3 A:LYS70 4.7 80.7 1.0 CD1 A:LEU56 4.7 64.6 1.0 CD1 A:ILE73 4.8 65.3 1.0 CE A:LYS70 4.9 78.2 1.0 HD21 A:ASN53 4.9 80.3 1.0 HD3 A:LYS70 4.9 66.9 1.0 CZ A:TYR130 5.0 71.3 1.0

S.S.Smaga, C.Xu, B.J.Summers, K.M.Digianantonio, J.R.Perilla, Y.Xiong. Mxb Restricts Hiv-1 By Targeting the Tri-Hexamer Interface of the Viral Capsid. Structure V. 27 1234 2019.
ISSN: ISSN 0969-2126
PubMed: 31155311
DOI: 10.1016/J.STR.2019.04.015