Chlorine in PDB 6mro: Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
Protein crystallography data
The structure of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53., PDB code: 6mro
was solved by
S.Singh,
F.Forouhar,
C.Wang,
J.F.Hunt,
Northeast Structural Genomicsconsortium (Nesg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.99 /
1.60
|
Space group
|
P 43
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.990,
40.990,
104.850,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.9 /
21
|
Other elements in 6mro:
The structure of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
(pdb code 6mro). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53., PDB code: 6mro:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 6mro
Go back to
Chlorine Binding Sites List in 6mro
Chlorine binding site 1 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:80.1
occ:1.00
|
OXT
|
A:LYS194
|
2.9
|
53.3
|
1.0
|
CE1
|
A:HIS125
|
3.4
|
35.2
|
1.0
|
C
|
A:LYS194
|
3.7
|
49.1
|
1.0
|
CG
|
A:LYS194
|
3.9
|
36.1
|
1.0
|
O
|
A:LYS194
|
4.0
|
56.8
|
1.0
|
NE2
|
A:HIS125
|
4.1
|
39.6
|
1.0
|
O
|
A:LEU165
|
4.4
|
38.0
|
1.0
|
ND1
|
A:HIS125
|
4.5
|
35.0
|
1.0
|
CE
|
A:LYS194
|
4.7
|
35.4
|
1.0
|
CA
|
A:LYS194
|
4.7
|
39.6
|
1.0
|
CB
|
A:LYS194
|
4.9
|
35.3
|
1.0
|
CD
|
A:LYS194
|
4.9
|
34.6
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 6mro
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Chlorine Binding Sites List in 6mro
Chlorine binding site 2 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:51.9
occ:1.00
|
O
|
A:PRO18
|
3.0
|
18.3
|
1.0
|
O
|
A:HOH351
|
3.1
|
46.0
|
1.0
|
CB
|
A:GLN23
|
3.8
|
22.2
|
1.0
|
C
|
A:PRO18
|
3.9
|
18.0
|
1.0
|
CD2
|
A:HIS17
|
4.0
|
24.0
|
1.0
|
CA
|
A:PRO20
|
4.1
|
21.3
|
1.0
|
N
|
A:PRO20
|
4.1
|
18.0
|
1.0
|
CD
|
A:PRO18
|
4.2
|
21.6
|
1.0
|
CG
|
A:GLN23
|
4.3
|
34.4
|
1.0
|
CB
|
A:PRO18
|
4.3
|
19.5
|
1.0
|
C
|
A:GLN19
|
4.3
|
17.2
|
1.0
|
O
|
A:GLN19
|
4.3
|
19.4
|
1.0
|
N
|
A:PRO18
|
4.4
|
19.1
|
1.0
|
CG
|
A:PRO20
|
4.4
|
25.3
|
1.0
|
CD
|
A:PRO20
|
4.4
|
19.8
|
1.0
|
CA
|
A:PRO18
|
4.4
|
18.0
|
1.0
|
CG
|
A:PRO18
|
4.6
|
23.7
|
1.0
|
CB
|
A:HIS17
|
4.7
|
23.5
|
1.0
|
CB
|
A:PRO20
|
4.7
|
24.0
|
1.0
|
CG
|
A:HIS17
|
4.7
|
20.9
|
1.0
|
N
|
A:GLN19
|
4.8
|
18.5
|
1.0
|
OE1
|
A:GLN23
|
4.9
|
46.2
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 6mro
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Chlorine Binding Sites List in 6mro
Chlorine binding site 3 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:73.7
occ:1.00
|
ND2
|
A:ASN87
|
3.1
|
30.9
|
1.0
|
O
|
A:HOH440
|
3.5
|
42.3
|
1.0
|
CB
|
A:ASN87
|
3.5
|
26.9
|
1.0
|
OE1
|
A:GLU90
|
3.5
|
56.1
|
1.0
|
CG
|
A:ASN87
|
3.8
|
27.0
|
1.0
|
OE2
|
A:GLU90
|
3.9
|
57.6
|
1.0
|
CD2
|
A:LEU62
|
3.9
|
35.9
|
1.0
|
CD
|
A:GLU90
|
4.0
|
54.9
|
1.0
|
O
|
A:HOH422
|
4.2
|
46.5
|
1.0
|
CA
|
A:ASN87
|
4.7
|
26.1
|
1.0
|
N
|
A:ASN87
|
4.9
|
27.7
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 6mro
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Chlorine Binding Sites List in 6mro
Chlorine binding site 4 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:79.4
occ:1.00
|
O
|
A:SER178
|
3.5
|
23.8
|
1.0
|
CB
|
A:ASP177
|
3.9
|
21.4
|
1.0
|
CE1
|
A:HIS17
|
4.0
|
23.4
|
1.0
|
CG
|
A:ASP177
|
4.1
|
23.5
|
1.0
|
N
|
A:SER178
|
4.1
|
18.9
|
1.0
|
O
|
A:GLY183
|
4.1
|
40.5
|
1.0
|
OD2
|
A:ASP177
|
4.2
|
23.2
|
1.0
|
C
|
A:SER178
|
4.3
|
25.4
|
1.0
|
CG2
|
A:ILE15
|
4.4
|
23.8
|
1.0
|
NE2
|
A:HIS17
|
4.4
|
25.7
|
1.0
|
O
|
A:HOH413
|
4.4
|
27.3
|
1.0
|
CA
|
A:ASP177
|
4.5
|
18.5
|
1.0
|
OD1
|
A:ASP177
|
4.6
|
27.0
|
1.0
|
C
|
A:ASP177
|
4.6
|
19.0
|
1.0
|
CA
|
A:SER178
|
4.8
|
23.1
|
1.0
|
C
|
A:GLY183
|
4.9
|
42.4
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 6mro
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Chlorine Binding Sites List in 6mro
Chlorine binding site 5 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl208
b:84.3
occ:1.00
|
O
|
A:GLU115
|
4.7
|
46.8
|
0.6
|
O
|
A:GLU115
|
4.7
|
46.9
|
0.4
|
OE2
|
A:GLU116
|
4.7
|
63.5
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 6mro
Go back to
Chlorine Binding Sites List in 6mro
Chlorine binding site 6 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl209
b:74.2
occ:1.00
|
O
|
A:HOH307
|
3.1
|
50.2
|
1.0
|
CG
|
A:GLU90
|
4.2
|
49.1
|
1.0
|
CB
|
A:GLU90
|
5.0
|
42.2
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 6mro
Go back to
Chlorine Binding Sites List in 6mro
Chlorine binding site 7 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl210
b:65.3
occ:1.00
|
O
|
A:HOH301
|
2.9
|
47.1
|
1.0
|
N
|
A:GLU146
|
3.1
|
32.9
|
1.0
|
CA
|
A:GLU146
|
3.8
|
34.7
|
1.0
|
CB
|
A:GLU146
|
3.9
|
36.4
|
1.0
|
CE2
|
A:TYR147
|
3.9
|
52.9
|
1.0
|
C
|
A:GLU146
|
4.0
|
39.5
|
1.0
|
CZ
|
A:TYR147
|
4.1
|
54.5
|
1.0
|
C
|
A:GLY145
|
4.2
|
35.0
|
1.0
|
CD2
|
A:TYR147
|
4.2
|
49.4
|
1.0
|
CA
|
A:GLY145
|
4.2
|
36.2
|
1.0
|
N
|
A:TYR147
|
4.3
|
44.1
|
1.0
|
O
|
A:GLU146
|
4.3
|
38.2
|
1.0
|
CE1
|
A:TYR147
|
4.5
|
52.4
|
1.0
|
OH
|
A:TYR147
|
4.5
|
60.1
|
1.0
|
CG
|
A:TYR147
|
4.6
|
48.5
|
1.0
|
CD1
|
A:TYR147
|
4.7
|
49.7
|
1.0
|
CG
|
A:GLU146
|
4.9
|
35.7
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 6mro
Go back to
Chlorine Binding Sites List in 6mro
Chlorine binding site 8 out
of 8 in the Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution, Northeast Structural Genomics Consortium (Nesg) Target MVR53. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl211
b:52.4
occ:1.00
|
OG1
|
A:THR96
|
3.8
|
45.7
|
1.0
|
N
|
A:THR96
|
4.0
|
32.9
|
1.0
|
NH1
|
A:ARG35
|
4.1
|
45.3
|
1.0
|
CA
|
A:PHE95
|
4.3
|
28.9
|
1.0
|
OE2
|
A:GLU99
|
4.4
|
34.1
|
1.0
|
CG
|
A:GLU99
|
4.4
|
32.6
|
1.0
|
CD
|
A:GLU99
|
4.5
|
34.5
|
1.0
|
O
|
A:LEU94
|
4.6
|
34.1
|
1.0
|
C
|
A:PHE95
|
4.7
|
35.1
|
1.0
|
CB
|
A:THR96
|
4.7
|
41.8
|
1.0
|
CG2
|
A:THR96
|
4.8
|
47.1
|
1.0
|
CB
|
A:PHE95
|
4.9
|
24.8
|
1.0
|
NH2
|
A:ARG35
|
4.9
|
42.1
|
1.0
|
CA
|
A:THR96
|
5.0
|
34.7
|
1.0
|
CZ
|
A:ARG35
|
5.0
|
40.6
|
1.0
|
|
Reference:
S.Singh,
F.Forouhar,
C.Wang,
S.M.Vorobiev,
M.J.Neky,
J.F.Hunt.
Crystal Structure of A Methyl Transferase From Methanosarcina Acetivorans at 1.6 Angstroms Resolution. To Be Published.
Page generated: Sun Jul 28 03:23:23 2024
|