Chlorine in PDB 6mtn: Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom

The structure of Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom, PDB code: 6mtn was solved by Y.-T.Lai, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.04 / 2.50
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	131.500, 131.500, 315.740, 90.00, 90.00, 120.00
R / Rfree (%)	22.3 / 26.3

The binding sites of Chlorine atom in the Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom (pdb code 6mtn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom, PDB code: 6mtn:

Chlorine binding site 1 out of 1 in the Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hiv-1 BG505 Sosip.664 Prefusion Env Trimer Bound to Small Molecule Hiv-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl638 b:59.6 occ:1.00 CL G:JYJ638 0.0 59.6 1.0 C17 G:JYJ638 1.8 37.2 1.0 C18 G:JYJ638 2.8 51.5 1.0 C16 G:JYJ638 2.8 41.3 1.0 O G:GLN432 3.4 38.6 1.0 CA G:ALA433 3.4 32.7 1.0 N G:MET434 3.5 25.2 1.0 N G:MET426 3.6 61.8 1.0 C G:ASN425 3.7 50.5 1.0 C G:ALA433 3.7 31.1 1.0 C G:GLN432 3.8 32.0 1.0 O G:ILE424 3.8 30.8 1.0 N G:ALA433 3.9 36.6 1.0 CA G:ASN425 3.9 37.0 1.0 CB G:MET426 4.0 45.3 1.0 C15 G:JYJ638 4.1 57.8 1.0 C13 G:JYJ638 4.1 64.8 1.0 CB G:MET434 4.1 8.0 1.0 CA G:MET426 4.1 60.5 1.0 O G:ASN425 4.2 47.7 1.0 CA G:MET434 4.4 12.8 1.0 C14 G:JYJ638 4.6 62.1 1.0 CE G:MET426 4.6 75.3 1.0 CD1 G:ILE424 4.6 27.0 1.0 C G:ILE424 4.6 38.9 1.0 CG G:GLN432 4.6 51.5 1.0 O G:ALA433 4.6 31.1 1.0 N G:ASN425 4.7 35.0 1.0 CB G:ALA433 4.7 18.7 1.0 CD1 G:LEU116 4.7 13.9 1.0 CB G:GLN432 5.0 45.4 1.0

Y.T.Lai, T.Wang, S.O'dell, M.K.Louder, A.Schon, C.S.F.Cheung, G.Y.Chuang, A.Druz, B.Lin, K.Mckee, D.Peng, Y.Yang, B.Zhang, A.Herschhorn, J.Sodroski, R.T.Bailer, N.A.Doria-Rose, J.R.Mascola, D.R.Langley, P.D.Kwong. Lattice Engineering Enables Definition of Molecular Features Allowing For Potent Small-Molecule Inhibition of Hiv-1 Entry. Nat Commun V. 10 47 2019.
ISSN: ESSN 2041-1723
PubMed: 30604750
DOI: 10.1038/S41467-018-07851-1