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Chlorine in PDB 6mtz: Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27

Protein crystallography data

The structure of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27, PDB code: 6mtz was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.94 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.730, 66.740, 200.470, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.8

Other elements in 6mtz:

The structure of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 also contains other interesting chemical elements:

Iodine (I) 30 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 (pdb code 6mtz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27, PDB code: 6mtz:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6mtz

Go back to Chlorine Binding Sites List in 6mtz
Chlorine binding site 1 out of 4 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl622

b:71.5
occ:1.00
NZ A:LYS245 3.4 42.6 1.0
O A:HOH873 3.6 48.9 1.0
CD A:LYS245 3.9 36.0 1.0
CE A:LYS245 4.0 32.8 1.0
CE A:MET180 4.0 24.4 1.0
CG A:TYR333 4.2 27.1 1.0
O A:MET180 4.3 33.2 1.0
SD A:MET180 4.3 32.2 1.0
CD1 A:TYR333 4.4 30.6 1.0
CB A:TYR333 4.5 33.5 1.0
SG A:CYS249 4.5 38.8 1.0
CD2 A:TYR333 4.6 28.4 1.0
CA A:MET180 4.8 30.0 1.0
CG A:LYS245 4.8 39.1 1.0
CE1 A:TYR333 4.9 36.4 1.0

Chlorine binding site 2 out of 4 in 6mtz

Go back to Chlorine Binding Sites List in 6mtz
Chlorine binding site 2 out of 4 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl623

b:65.4
occ:1.00
N A:LYS246 3.3 48.2 1.0
O A:LEU244 3.4 48.5 1.0
O A:SER243 3.6 50.2 1.0
C A:LEU244 3.6 48.0 1.0
O A:HOH802 3.6 49.4 1.0
CB A:LYS246 3.6 53.4 1.0
N A:HIS247 3.8 60.2 1.0
CA A:LYS246 3.9 54.3 1.0
N A:LYS245 4.0 54.9 1.0
CA A:LEU244 4.1 42.3 1.0
C A:LYS245 4.1 43.7 1.0
ND1 A:HIS247 4.1 84.0 1.0
CG A:HIS247 4.2 83.4 1.0
CG A:LYS246 4.3 54.2 1.0
C A:LYS246 4.3 55.9 1.0
CE A:LYS246 4.3 59.6 1.0
CE1 A:HIS247 4.4 84.4 1.0
CA A:LYS245 4.4 41.0 1.0
CD2 A:HIS247 4.5 80.5 1.0
C A:SER243 4.6 35.9 1.0
NE2 A:HIS247 4.6 82.5 1.0
CB A:HIS247 4.6 74.7 1.0
CA A:HIS247 4.8 65.2 1.0
N A:LEU244 4.8 37.5 1.0
CD A:LYS246 4.9 56.5 1.0

Chlorine binding site 3 out of 4 in 6mtz

Go back to Chlorine Binding Sites List in 6mtz
Chlorine binding site 3 out of 4 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:76.6
occ:1.00
N B:ILE90 3.4 49.4 1.0
O B:ILE90 3.6 45.7 1.0
CA B:GLN89 3.8 52.7 1.0
CG2 B:ILE90 4.0 45.3 1.0
C B:GLN89 4.1 53.8 1.0
CB B:GLN89 4.1 51.3 1.0
CA B:ILE90 4.4 42.8 1.0
C B:ILE90 4.4 44.4 1.0
O B:ILE88 4.6 68.0 1.0
CB B:TRP108 4.7 42.2 1.0
CG B:GLN89 4.7 62.1 1.0
CB B:ILE90 4.8 43.1 1.0

Chlorine binding site 4 out of 4 in 6mtz

Go back to Chlorine Binding Sites List in 6mtz
Chlorine binding site 4 out of 4 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl418

b:49.3
occ:1.00
O B:HOH569 3.6 34.8 1.0
CD1 B:LEU241 4.1 36.6 1.0
CD1 B:LEU176 4.1 28.4 1.0
O B:HOH606 4.4 54.0 1.0
CD2 B:LEU241 4.4 35.2 1.0
O B:LEU221 4.5 30.9 1.0
CB B:ALA237 4.5 19.9 1.0
CG B:LEU241 4.5 35.5 1.0
O B:ALA220 4.7 31.3 1.0
O B:HOH559 4.8 34.7 1.0
C B:LEU221 4.9 35.1 1.0
CB B:GLU184 4.9 35.1 1.0
CA B:LEU221 4.9 19.6 1.0
CD2 B:LEU221 5.0 28.6 1.0

Reference:

J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 To Be Published.
Page generated: Sun Jul 28 03:25:19 2024

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