Chlorine in PDB 6n7l: Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Protein crystallography data
The structure of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1, PDB code: 6n7l
was solved by
Seattle Structural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.79 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.150,
168.290,
199.730,
90.00,
97.97,
90.00
|
R / Rfree (%)
|
14.9 /
19.1
|
Other elements in 6n7l:
The structure of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
(pdb code 6n7l). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the
Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1, PDB code: 6n7l:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 1 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl415
b:48.1
occ:1.00
|
N
|
A:LYS139
|
3.4
|
41.5
|
1.0
|
CA
|
A:LEU138
|
3.8
|
35.1
|
1.0
|
CG2
|
A:VAL142
|
3.8
|
39.8
|
1.0
|
CB
|
A:LEU138
|
4.0
|
25.9
|
1.0
|
O
|
A:HOH550
|
4.0
|
39.6
|
1.0
|
CD2
|
A:LEU138
|
4.1
|
23.8
|
1.0
|
C
|
A:LEU138
|
4.1
|
36.3
|
1.0
|
CB
|
A:LYS139
|
4.2
|
42.1
|
1.0
|
CD1
|
A:ILE147
|
4.3
|
26.2
|
1.0
|
CB
|
A:VAL142
|
4.3
|
35.0
|
1.0
|
CG1
|
A:ILE147
|
4.4
|
30.8
|
1.0
|
CA
|
A:LYS139
|
4.4
|
41.0
|
1.0
|
CD2
|
A:LEU300
|
4.7
|
24.6
|
1.0
|
O
|
A:HIS137
|
4.7
|
33.7
|
1.0
|
CG
|
A:LEU138
|
4.7
|
32.5
|
1.0
|
OD1
|
A:ASN304
|
4.9
|
44.7
|
1.0
|
CB
|
A:ASN304
|
4.9
|
30.4
|
1.0
|
|
Chlorine binding site 2 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 2 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl411
b:49.6
occ:1.00
|
N
|
B:LYS139
|
3.4
|
36.8
|
1.0
|
CA
|
B:LEU138
|
3.7
|
31.3
|
1.0
|
CG
|
B:LYS139
|
3.7
|
60.1
|
1.0
|
O
|
B:HOH529
|
3.9
|
40.1
|
1.0
|
CG2
|
B:VAL142
|
3.9
|
33.9
|
1.0
|
CB
|
B:LEU138
|
4.0
|
34.0
|
1.0
|
C
|
B:LEU138
|
4.1
|
35.1
|
1.0
|
CD2
|
B:LEU138
|
4.2
|
29.9
|
1.0
|
CD1
|
B:ILE147
|
4.2
|
27.1
|
1.0
|
CB
|
B:LYS139
|
4.3
|
43.5
|
1.0
|
CG1
|
B:ILE147
|
4.4
|
29.7
|
1.0
|
CA
|
B:LYS139
|
4.4
|
41.8
|
1.0
|
CD2
|
B:LEU300
|
4.4
|
22.2
|
1.0
|
CB
|
B:VAL142
|
4.4
|
34.6
|
1.0
|
CD
|
B:LYS139
|
4.5
|
69.5
|
1.0
|
O
|
B:HIS137
|
4.7
|
33.0
|
1.0
|
CG
|
B:LEU138
|
4.7
|
33.2
|
1.0
|
CB
|
B:ASN304
|
4.9
|
34.8
|
1.0
|
CB
|
B:LEU300
|
4.9
|
27.4
|
1.0
|
N
|
B:LEU138
|
5.0
|
27.4
|
1.0
|
|
Chlorine binding site 3 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 3 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl416
b:54.9
occ:1.00
|
N
|
C:LYS139
|
3.5
|
34.8
|
1.0
|
CG2
|
C:VAL142
|
3.8
|
32.8
|
1.0
|
O
|
C:HOH569
|
3.8
|
38.9
|
1.0
|
CG
|
C:LYS139
|
3.9
|
56.5
|
1.0
|
CA
|
C:LEU138
|
3.9
|
29.8
|
1.0
|
CD1
|
C:ILE147
|
4.1
|
22.7
|
1.0
|
CB
|
C:LEU138
|
4.2
|
23.9
|
1.0
|
CD2
|
C:LEU138
|
4.2
|
32.2
|
1.0
|
C
|
C:LEU138
|
4.2
|
34.4
|
1.0
|
CB
|
C:LYS139
|
4.2
|
48.2
|
1.0
|
CG1
|
C:ILE147
|
4.3
|
25.6
|
1.0
|
CB
|
C:VAL142
|
4.4
|
31.7
|
1.0
|
CD
|
C:LYS139
|
4.4
|
66.8
|
1.0
|
CA
|
C:LYS139
|
4.5
|
42.9
|
1.0
|
CD2
|
C:LEU300
|
4.6
|
19.2
|
1.0
|
O
|
C:HIS137
|
4.8
|
31.9
|
1.0
|
OD1
|
C:ASN304
|
4.8
|
51.9
|
1.0
|
CG
|
C:LEU138
|
4.8
|
25.3
|
1.0
|
CB
|
C:ASN304
|
4.9
|
34.7
|
1.0
|
CB
|
C:LEU300
|
5.0
|
23.5
|
1.0
|
|
Chlorine binding site 4 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 4 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl512
b:53.4
occ:1.00
|
N
|
D:LYS139
|
3.3
|
35.0
|
1.0
|
CA
|
D:LEU138
|
3.8
|
30.6
|
1.0
|
CG2
|
D:VAL142
|
3.8
|
37.9
|
1.0
|
CB
|
D:LEU138
|
4.0
|
26.7
|
1.0
|
C
|
D:LEU138
|
4.1
|
37.4
|
1.0
|
CB
|
D:LYS139
|
4.1
|
42.3
|
1.0
|
O
|
D:HOH700
|
4.2
|
53.5
|
1.0
|
CD2
|
D:LEU138
|
4.3
|
28.7
|
1.0
|
CD1
|
D:ILE147
|
4.3
|
28.8
|
1.0
|
CA
|
D:LYS139
|
4.3
|
38.9
|
1.0
|
CB
|
D:VAL142
|
4.3
|
36.6
|
1.0
|
CG1
|
D:ILE147
|
4.4
|
32.1
|
1.0
|
CD2
|
D:LEU300
|
4.7
|
25.1
|
1.0
|
O
|
D:HIS137
|
4.7
|
33.2
|
1.0
|
CG
|
D:LEU138
|
4.8
|
32.8
|
1.0
|
OD1
|
D:ASN304
|
4.8
|
56.6
|
1.0
|
CB
|
D:ASN304
|
4.9
|
31.8
|
1.0
|
CB
|
D:LEU300
|
5.0
|
28.5
|
1.0
|
|
Chlorine binding site 5 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 5 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl413
b:55.3
occ:1.00
|
N
|
E:LYS139
|
3.3
|
39.9
|
1.0
|
O2
|
E:EDO407
|
3.6
|
68.9
|
1.0
|
CA
|
E:LEU138
|
3.7
|
35.2
|
1.0
|
CG2
|
E:VAL142
|
3.8
|
48.5
|
1.0
|
CB
|
E:LEU138
|
4.0
|
38.4
|
1.0
|
CG
|
E:LYS139
|
4.0
|
67.0
|
1.0
|
C
|
E:LEU138
|
4.0
|
38.6
|
1.0
|
CD1
|
E:ILE147
|
4.2
|
34.8
|
1.0
|
CD2
|
E:LEU138
|
4.2
|
36.9
|
1.0
|
O
|
E:HOH543
|
4.2
|
39.1
|
1.0
|
CB
|
E:VAL142
|
4.2
|
54.2
|
1.0
|
CB
|
E:LYS139
|
4.2
|
60.3
|
1.0
|
C2
|
E:EDO407
|
4.3
|
69.8
|
1.0
|
CG1
|
E:ILE147
|
4.3
|
31.3
|
1.0
|
CA
|
E:LYS139
|
4.4
|
53.3
|
1.0
|
CD2
|
E:LEU300
|
4.6
|
24.2
|
1.0
|
CG
|
E:LEU138
|
4.7
|
36.7
|
1.0
|
O
|
E:HIS137
|
4.7
|
37.3
|
1.0
|
OD1
|
E:ASN304
|
4.8
|
50.7
|
1.0
|
CB
|
E:ASN304
|
4.8
|
34.4
|
1.0
|
N
|
E:LEU138
|
5.0
|
34.4
|
1.0
|
CB
|
E:LEU300
|
5.0
|
31.8
|
1.0
|
|
Chlorine binding site 6 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 6 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl414
b:56.5
occ:1.00
|
N
|
F:LYS139
|
3.4
|
44.8
|
1.0
|
CA
|
F:LEU138
|
3.9
|
36.6
|
1.0
|
CG2
|
F:VAL142
|
4.0
|
36.0
|
1.0
|
CD1
|
F:ILE147
|
4.1
|
32.7
|
1.0
|
CD2
|
F:LEU138
|
4.1
|
32.1
|
1.0
|
CB
|
F:LYS139
|
4.1
|
39.8
|
1.0
|
CB
|
F:LEU138
|
4.2
|
31.5
|
1.0
|
C
|
F:LEU138
|
4.2
|
43.2
|
1.0
|
CA
|
F:LYS139
|
4.4
|
42.3
|
1.0
|
CG1
|
F:ILE147
|
4.4
|
32.9
|
1.0
|
CD2
|
F:LEU300
|
4.4
|
26.2
|
1.0
|
CB
|
F:VAL142
|
4.5
|
40.7
|
1.0
|
O
|
F:HIS137
|
4.8
|
40.9
|
1.0
|
CB
|
F:ASN304
|
4.8
|
47.2
|
1.0
|
CB
|
F:LEU300
|
4.8
|
30.2
|
1.0
|
CG
|
F:LEU138
|
4.8
|
31.2
|
1.0
|
OD1
|
F:ASN304
|
4.8
|
63.7
|
1.0
|
O
|
F:LEU300
|
4.9
|
29.5
|
1.0
|
|
Chlorine binding site 7 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 7 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl511
b:54.9
occ:1.00
|
N
|
G:LYS139
|
3.3
|
39.7
|
1.0
|
CA
|
G:LEU138
|
3.8
|
34.4
|
1.0
|
CG2
|
G:VAL142
|
4.0
|
36.8
|
1.0
|
C
|
G:LEU138
|
4.1
|
34.6
|
1.0
|
O
|
G:HOH644
|
4.1
|
46.0
|
1.0
|
CB
|
G:LYS139
|
4.1
|
42.6
|
1.0
|
CB
|
G:LEU138
|
4.1
|
32.0
|
1.0
|
CD1
|
G:ILE147
|
4.3
|
32.9
|
1.0
|
CD2
|
G:LEU138
|
4.3
|
35.4
|
1.0
|
CA
|
G:LYS139
|
4.3
|
41.4
|
1.0
|
CG1
|
G:ILE147
|
4.5
|
38.1
|
1.0
|
CB
|
G:VAL142
|
4.5
|
42.3
|
1.0
|
CD2
|
G:LEU300
|
4.5
|
29.3
|
1.0
|
O
|
G:HIS137
|
4.7
|
44.8
|
1.0
|
CB
|
G:ASN304
|
4.7
|
36.7
|
1.0
|
OD1
|
G:ASN304
|
4.7
|
60.9
|
1.0
|
CG
|
G:LEU138
|
4.9
|
32.8
|
1.0
|
CB
|
G:LEU300
|
4.9
|
25.2
|
1.0
|
O
|
G:LEU300
|
5.0
|
27.5
|
1.0
|
|
Chlorine binding site 8 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 8 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl710
b:54.7
occ:1.00
|
N
|
H:LYS139
|
3.4
|
42.0
|
1.0
|
CA
|
H:LEU138
|
3.7
|
35.7
|
1.0
|
O
|
H:HOH817
|
3.9
|
44.6
|
1.0
|
CG2
|
H:VAL142
|
4.0
|
37.9
|
1.0
|
CB
|
H:LEU138
|
4.1
|
34.9
|
1.0
|
C
|
H:LEU138
|
4.1
|
36.9
|
1.0
|
CD1
|
H:ILE147
|
4.1
|
30.7
|
1.0
|
CD2
|
H:LEU138
|
4.1
|
42.5
|
1.0
|
CB
|
H:LYS139
|
4.2
|
31.6
|
1.0
|
CA
|
H:LYS139
|
4.4
|
38.2
|
1.0
|
CG1
|
H:ILE147
|
4.5
|
32.5
|
1.0
|
CB
|
H:VAL142
|
4.5
|
41.0
|
1.0
|
CD2
|
H:LEU300
|
4.5
|
28.0
|
1.0
|
OD1
|
H:ASN304
|
4.6
|
63.5
|
1.0
|
CB
|
H:ASN304
|
4.6
|
37.8
|
1.0
|
O
|
H:HIS137
|
4.6
|
31.5
|
1.0
|
CG
|
H:LEU138
|
4.8
|
38.1
|
1.0
|
CB
|
H:LEU300
|
4.9
|
26.6
|
1.0
|
O
|
H:LEU300
|
4.9
|
29.3
|
1.0
|
N
|
H:LEU138
|
5.0
|
36.6
|
1.0
|
CG
|
H:ASN304
|
5.0
|
56.8
|
1.0
|
|
Chlorine binding site 9 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 9 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl410
b:80.6
occ:1.00
|
N
|
I:LYS139
|
3.5
|
62.7
|
1.0
|
CG2
|
I:VAL142
|
3.8
|
54.3
|
1.0
|
CB
|
I:LYS139
|
4.0
|
60.0
|
1.0
|
CA
|
I:LEU138
|
4.0
|
54.9
|
1.0
|
CD1
|
I:ILE147
|
4.2
|
38.8
|
1.0
|
CB
|
I:LEU138
|
4.3
|
58.3
|
1.0
|
C
|
I:LEU138
|
4.3
|
60.5
|
1.0
|
CD2
|
I:LEU138
|
4.3
|
49.0
|
1.0
|
CB
|
I:VAL142
|
4.4
|
58.6
|
1.0
|
CA
|
I:LYS139
|
4.4
|
59.2
|
1.0
|
CG1
|
I:ILE147
|
4.4
|
42.7
|
1.0
|
CB
|
I:ASN304
|
4.5
|
50.9
|
1.0
|
OD1
|
I:ASN304
|
4.5
|
76.4
|
1.0
|
CD2
|
I:LEU300
|
4.8
|
39.0
|
1.0
|
CG
|
I:ASN304
|
4.9
|
67.7
|
1.0
|
O
|
I:HIS137
|
4.9
|
46.2
|
1.0
|
O
|
I:LEU300
|
4.9
|
43.1
|
1.0
|
CG
|
I:LEU138
|
5.0
|
56.5
|
1.0
|
|
Chlorine binding site 10 out
of 12 in 6n7l
Go back to
Chlorine Binding Sites List in 6n7l
Chlorine binding site 10 out
of 12 in the Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl411
b:56.2
occ:1.00
|
N
|
J:LYS139
|
3.5
|
54.0
|
1.0
|
CA
|
J:LEU138
|
3.9
|
47.1
|
1.0
|
CG2
|
J:VAL142
|
4.2
|
46.5
|
1.0
|
CB
|
J:LEU138
|
4.2
|
44.2
|
1.0
|
C
|
J:LEU138
|
4.2
|
52.4
|
1.0
|
CD1
|
J:ILE147
|
4.2
|
36.2
|
1.0
|
CB
|
J:LYS139
|
4.3
|
47.6
|
1.0
|
CD2
|
J:LEU300
|
4.4
|
32.8
|
1.0
|
CD2
|
J:LEU138
|
4.4
|
39.5
|
1.0
|
CA
|
J:LYS139
|
4.5
|
49.4
|
1.0
|
CG1
|
J:ILE147
|
4.5
|
38.9
|
1.0
|
CB
|
J:VAL142
|
4.6
|
43.9
|
1.0
|
O
|
J:HIS137
|
4.7
|
45.9
|
1.0
|
CB
|
J:ASN304
|
4.7
|
47.4
|
1.0
|
CB
|
J:LEU300
|
4.7
|
38.7
|
1.0
|
OD1
|
J:ASN304
|
4.7
|
66.4
|
1.0
|
CG
|
J:LEU138
|
4.9
|
43.6
|
1.0
|
O
|
J:LEU300
|
5.0
|
42.4
|
1.0
|
CG
|
J:LEU300
|
5.0
|
40.7
|
1.0
|
|
Reference:
T.E.Edwards,
D.M.Dranow,
P.S.Horanyi,
D.D.Lorimer,
Seattle Structural Genomics Center For Infectious Disease.
Crystal Structure of An Alcohol Dehydrogenase From Elizabethkingia Anophelis NUHP1 To Be Published.
Page generated: Sun Jul 28 20:25:33 2024
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