Chlorine in PDB 6neu: Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant
Protein crystallography data
The structure of Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant, PDB code: 6neu
was solved by
A.Rodriguez Benitez,
S.E.Tweedy,
S.A.Baker Dockrey,
A.L.Lukowski,
T.Wymore,
D.Khare,
C.L.Brooks,
B.A.Palfey,
J.L.Smith,
A.R.H.Narayan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.91 /
2.30
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.801,
184.173,
163.520,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.1 /
25.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant
(pdb code 6neu). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant, PDB code: 6neu:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6neu
Go back to
Chlorine Binding Sites List in 6neu
Chlorine binding site 1 out
of 2 in the Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:46.2
occ:1.00
|
H
|
A:GLY334
|
2.3
|
53.7
|
1.0
|
HA
|
A:PRO329
|
2.5
|
52.7
|
1.0
|
H
|
A:ALA333
|
2.9
|
55.0
|
1.0
|
N
|
A:GLY334
|
3.1
|
44.7
|
1.0
|
H1'2
|
A:FAD501
|
3.1
|
42.7
|
1.0
|
O
|
A:HOH643
|
3.1
|
42.6
|
1.0
|
HA3
|
A:GLY334
|
3.2
|
50.0
|
1.0
|
N10
|
A:FAD501
|
3.2
|
40.3
|
1.0
|
HA2
|
A:GLY332
|
3.3
|
68.9
|
1.0
|
HB3
|
A:PRO329
|
3.4
|
58.7
|
1.0
|
CA
|
A:PRO329
|
3.4
|
44.0
|
1.0
|
C1'
|
A:FAD501
|
3.4
|
35.6
|
1.0
|
H
|
A:GLY332
|
3.4
|
58.7
|
1.0
|
H1'1
|
A:FAD501
|
3.4
|
42.7
|
1.0
|
N
|
A:ALA333
|
3.5
|
45.8
|
1.0
|
C10
|
A:FAD501
|
3.5
|
45.2
|
1.0
|
CA
|
A:GLY334
|
3.6
|
41.6
|
1.0
|
C9A
|
A:FAD501
|
3.6
|
34.1
|
1.0
|
CB
|
A:PRO329
|
3.7
|
48.9
|
1.0
|
HB2
|
A:PRO329
|
3.7
|
58.7
|
1.0
|
CA
|
A:GLY332
|
3.9
|
57.4
|
1.0
|
N1
|
A:FAD501
|
3.9
|
41.6
|
1.0
|
N
|
A:GLY332
|
3.9
|
48.9
|
1.0
|
HZ
|
A:PHE386
|
4.0
|
45.9
|
1.0
|
C
|
A:GLY332
|
4.0
|
50.7
|
1.0
|
HA2
|
A:GLY334
|
4.1
|
50.0
|
1.0
|
C
|
A:PRO329
|
4.1
|
44.1
|
1.0
|
C9
|
A:FAD501
|
4.1
|
47.9
|
1.0
|
H9
|
A:FAD501
|
4.1
|
57.5
|
1.0
|
C
|
A:ALA333
|
4.1
|
46.3
|
1.0
|
O
|
A:VAL328
|
4.2
|
45.9
|
1.0
|
C4X
|
A:FAD501
|
4.2
|
45.9
|
1.0
|
O
|
A:PRO329
|
4.3
|
49.6
|
1.0
|
C5X
|
A:FAD501
|
4.3
|
44.7
|
1.0
|
CA
|
A:ALA333
|
4.4
|
45.0
|
1.0
|
N
|
A:PRO329
|
4.4
|
54.0
|
1.0
|
HB3
|
A:ALA327
|
4.5
|
46.0
|
1.0
|
H
|
A:HIS331
|
4.6
|
65.1
|
1.0
|
N5
|
A:FAD501
|
4.6
|
43.2
|
1.0
|
H
|
A:ALA335
|
4.6
|
43.1
|
1.0
|
C
|
A:VAL328
|
4.6
|
44.1
|
1.0
|
HE2
|
A:PHE386
|
4.7
|
45.8
|
1.0
|
HA3
|
A:GLY332
|
4.8
|
68.9
|
1.0
|
CZ
|
A:PHE386
|
4.8
|
38.2
|
1.0
|
C2
|
A:FAD501
|
4.8
|
45.7
|
1.0
|
C
|
A:GLY334
|
4.9
|
49.3
|
1.0
|
C2'
|
A:FAD501
|
5.0
|
44.0
|
1.0
|
HA
|
A:ALA333
|
5.0
|
54.0
|
1.0
|
N
|
A:HIS330
|
5.0
|
52.1
|
1.0
|
C
|
A:HIS331
|
5.0
|
49.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6neu
Go back to
Chlorine Binding Sites List in 6neu
Chlorine binding site 2 out
of 2 in the Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Fad-Dependent Monooxygenase Tropb From T. Stipitatus R206Q Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:47.2
occ:1.00
|
H
|
B:GLY334
|
2.3
|
43.6
|
1.0
|
HA
|
B:PRO329
|
2.6
|
40.4
|
1.0
|
H
|
B:ALA333
|
2.7
|
52.4
|
1.0
|
O
|
B:HOH652
|
2.9
|
38.8
|
1.0
|
H1'2
|
B:FAD501
|
3.1
|
47.1
|
1.0
|
O
|
B:HOH659
|
3.1
|
33.6
|
1.0
|
N
|
B:GLY334
|
3.1
|
36.3
|
1.0
|
HA2
|
B:GLY332
|
3.1
|
62.0
|
1.0
|
N10
|
B:FAD501
|
3.2
|
42.4
|
1.0
|
HA3
|
B:GLY334
|
3.3
|
46.1
|
1.0
|
H
|
B:GLY332
|
3.3
|
61.7
|
1.0
|
N
|
B:ALA333
|
3.4
|
43.6
|
1.0
|
HB3
|
B:PRO329
|
3.4
|
45.6
|
1.0
|
CA
|
B:PRO329
|
3.4
|
33.6
|
1.0
|
C10
|
B:FAD501
|
3.4
|
42.8
|
1.0
|
C1'
|
B:FAD501
|
3.5
|
39.3
|
1.0
|
H1'1
|
B:FAD501
|
3.6
|
47.1
|
1.0
|
HB2
|
B:PRO329
|
3.6
|
45.6
|
1.0
|
CB
|
B:PRO329
|
3.7
|
38.0
|
1.0
|
CA
|
B:GLY332
|
3.7
|
51.6
|
1.0
|
CA
|
B:GLY334
|
3.7
|
38.4
|
1.0
|
C9A
|
B:FAD501
|
3.7
|
49.9
|
1.0
|
N
|
B:GLY332
|
3.7
|
51.4
|
1.0
|
N1
|
B:FAD501
|
3.8
|
43.0
|
1.0
|
C
|
B:GLY332
|
3.9
|
47.2
|
1.0
|
HZ
|
B:PHE386
|
4.0
|
45.1
|
1.0
|
C4X
|
B:FAD501
|
4.1
|
51.8
|
1.0
|
C
|
B:PRO329
|
4.1
|
41.1
|
1.0
|
C
|
B:ALA333
|
4.2
|
39.2
|
1.0
|
HA2
|
B:GLY334
|
4.3
|
46.1
|
1.0
|
C5X
|
B:FAD501
|
4.3
|
42.3
|
1.0
|
O
|
B:VAL328
|
4.3
|
33.5
|
1.0
|
C9
|
B:FAD501
|
4.3
|
50.5
|
1.0
|
CA
|
B:ALA333
|
4.4
|
38.8
|
1.0
|
O
|
B:PRO329
|
4.4
|
46.0
|
1.0
|
H9
|
B:FAD501
|
4.4
|
60.6
|
1.0
|
H
|
B:ALA335
|
4.5
|
43.2
|
1.0
|
H
|
B:HIS331
|
4.5
|
49.5
|
1.0
|
N5
|
B:FAD501
|
4.5
|
40.7
|
1.0
|
N
|
B:PRO329
|
4.5
|
48.5
|
1.0
|
HA3
|
B:GLY332
|
4.6
|
62.0
|
1.0
|
C2
|
B:FAD501
|
4.6
|
42.2
|
1.0
|
HB3
|
B:ALA327
|
4.7
|
47.5
|
1.0
|
HE2
|
B:PHE386
|
4.7
|
45.7
|
1.0
|
C
|
B:VAL328
|
4.8
|
41.4
|
1.0
|
C
|
B:HIS331
|
4.8
|
45.1
|
1.0
|
CZ
|
B:PHE386
|
4.8
|
37.6
|
1.0
|
O
|
B:HOH643
|
4.8
|
43.0
|
1.0
|
C
|
B:GLY334
|
4.9
|
36.0
|
1.0
|
C4
|
B:FAD501
|
4.9
|
32.7
|
1.0
|
HA
|
B:ALA333
|
4.9
|
46.5
|
1.0
|
N
|
B:HIS330
|
4.9
|
40.6
|
1.0
|
C2'
|
B:FAD501
|
4.9
|
43.2
|
1.0
|
N
|
B:ALA335
|
5.0
|
36.0
|
1.0
|
|
Reference:
A.Rodriguez Benitez,
S.E.Tweedy,
S.A.Baker Dockrey,
A.L.Lukowski,
T.Wymore,
D.Khare,
C.L.Brooks 3Rd,
B.A.Palfey,
J.L.Smith,
A.R.H.Narayan.
Structural Basis For Selectivity in Flavin-Dependent Monooxygenase-Catalyzed Oxidative Dearomatization. Acs Catalysis V. 9 3633 2019.
ISSN: ESSN 2155-5435
PubMed: 31346489
DOI: 10.1021/ACSCATAL.8B04575
Page generated: Mon Jul 29 11:56:07 2024
|