Chlorine in PDB 6nfm: Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G

Enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G

All present enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G:
3.5.4.38;

Protein crystallography data

The structure of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G, PDB code: 6nfm was solved by K.Shi, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.77 / 2.53
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 50.314, 50.314, 149.808, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 27.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G (pdb code 6nfm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G, PDB code: 6nfm:

Chlorine binding site 1 out of 1 in 6nfm

Go back to Chlorine Binding Sites List in 6nfm
Chlorine binding site 1 out of 1 in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:60.1
occ:1.00
OG A:SER370 3.0 54.4 1.0
N A:ILE335 3.3 44.0 1.0
NE A:ARG374 3.7 46.6 1.0
CB A:SER334 3.7 48.6 1.0
CA A:SER334 3.8 47.8 1.0
CB A:SER370 4.0 51.7 1.0
CB A:ILE335 4.0 40.9 1.0
C A:SER334 4.0 47.3 1.0
CG A:ARG374 4.1 44.6 1.0
CG1 A:ILE335 4.2 40.0 1.0
CA A:SER370 4.2 46.0 1.0
CA A:ILE335 4.2 42.6 1.0
CD2 A:LEU373 4.2 39.9 1.0
O A:SER370 4.3 39.7 1.0
CZ A:ARG374 4.3 46.9 1.0
NH2 A:ARG374 4.4 46.3 1.0
CD A:ARG374 4.4 44.9 1.0
O A:ILE335 4.7 48.0 1.0
C A:SER370 4.7 43.0 1.0
CG A:LEU373 4.9 40.4 1.0
OG A:SER334 5.0 49.3 1.0
C A:ILE335 5.0 44.4 1.0

Reference:

K.Shi, H.Aihara. Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B To Be Published.
Page generated: Sat Dec 12 13:23:43 2020

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