Chlorine in PDB 6nhs: Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc

The structure of Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc, PDB code: 6nhs was solved by Y.Kim, C.Tesar, M.Endres, G.Babnigg, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.13 / 2.00
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	116.502, 116.502, 74.702, 90.00, 90.00, 120.00
R / Rfree (%)	16.3 / 20.2

The binding sites of Chlorine atom in the Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc (pdb code 6nhs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc, PDB code: 6nhs:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:22.0 occ:0.45 ND2 A:ASN127 3.3 20.1 1.0 NE2 A:GLN130 3.3 22.3 1.0 CD A:ARG129 3.7 23.8 0.5 CD A:ARG129 3.8 23.8 0.5 NH1 A:ARG129 3.9 23.8 0.5 CG A:GLN130 3.9 22.1 1.0 OD1 A:ASN127 3.9 22.3 1.0 CG A:ASN127 4.0 21.0 1.0 CD A:GLN130 4.1 25.9 1.0 NE A:ARG129 4.2 23.7 0.5 CB A:ARG129 4.3 23.8 0.5 CB A:ARG129 4.3 23.9 0.5 CG A:ARG129 4.3 23.2 0.5 CG A:ARG129 4.4 23.2 0.5 NE A:ARG129 4.7 23.2 0.5 CZ A:ARG129 4.7 24.0 0.5

Chlorine binding site 2 out of 3 in the Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl311 b:81.9 occ:1.00 O A:ASN134 4.0 26.6 1.0 CG A:PHE119 4.5 40.0 1.0 O A:HOH455 4.5 40.9 1.0 CD1 A:PHE119 4.5 43.9 1.0 OG1 A:THR121 4.7 32.9 0.6 CD2 A:PHE119 4.8 42.3 1.0 CB A:PHE119 4.8 34.9 1.0 NE1 A:TRP122 4.8 27.4 1.0 CE1 A:PHE119 4.8 45.8 1.0 C A:ASN134 4.9 25.7 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl312 b:78.2 occ:1.00 CD2 A:TRP230 4.0 39.0 1.0 CE2 A:TRP230 4.2 41.1 1.0 CE3 A:TRP230 4.2 38.0 1.0 CG A:TRP230 4.3 38.4 1.0 NE1 A:TRP230 4.6 40.1 1.0 CZ3 A:TRP230 4.6 41.9 1.0 CZ2 A:TRP230 4.6 42.5 1.0 CD1 A:TRP230 4.7 39.7 1.0 CB A:ALA232 4.7 42.6 1.0 CH2 A:TRP230 4.8 44.0 1.0 CZ A:PHE119 4.8 44.8 1.0 CB A:TRP230 4.9 35.2 1.0 OE1 A:GLN118 4.9 77.6 1.0

Y.Kim, C.Tesar, M.Endres, G.Babnigg, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Beta Lactamase Class D Ybxi From Nostoc To Be Published.