Chlorine in PDB 6ni0: Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis

Enzymatic activity of Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis, PDB code: 6ni0 was solved by Y.Kim, R.Wu, R.Endres, G.Babnigg, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.61 / 2.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 43.204, 43.204, 256.902, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 24.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis (pdb code 6ni0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis, PDB code: 6ni0:

Chlorine binding site 1 out of 1 in 6ni0

Go back to Chlorine Binding Sites List in 6ni0
Chlorine binding site 1 out of 1 in the Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:24.2
occ:1.00
NZ A:LYS56 2.8 22.2 1.0
OG A:SER109 3.2 24.4 1.0
NE1 A:TRP149 3.2 25.6 1.0
O A:HOH424 3.3 26.8 1.0
CE A:LYS56 3.4 28.6 1.0
CG A:LYS56 3.5 28.2 1.0
CB A:SER109 3.6 24.1 1.0
CG2 A:VAL106 3.8 27.5 1.0
CD1 A:TRP149 3.9 29.3 1.0
CG1 A:VAL106 3.9 24.9 1.0
OG A:SER53 4.0 26.7 1.0
CA A:VAL106 4.0 24.8 1.0
CD A:LYS56 4.1 22.4 1.0
CA A:SER53 4.1 22.3 1.0
CB A:VAL106 4.1 28.3 1.0
CE2 A:TRP149 4.4 32.4 1.0
O A:VAL106 4.5 31.1 1.0
CB A:SER53 4.5 23.5 1.0
O A:ALA52 4.6 18.6 1.0
C A:VAL106 4.8 23.9 1.0
N A:SER53 4.8 21.6 1.0
CZ2 A:TRP149 4.8 34.5 1.0
CB A:LYS56 4.9 16.5 1.0
O A:SER53 4.9 28.7 1.0
CD1 A:ILE150 4.9 23.6 1.0
C A:ALA52 4.9 14.3 1.0
C A:SER53 5.0 24.1 1.0

Reference:

Y.Kim, R.Wu, R.Endres, G.Babnigg, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Beta Lactamase Class D Ybxi From Burkholderia Thailandensis To Be Published.
Page generated: Sat Dec 12 13:23:59 2020

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