Chlorine in PDB 6nkc: Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.

Enzymatic activity of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.

All present enzymatic activity of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome., PDB code: 6nkc was solved by Y.Kim, L.Welk, G.Mukendi, G.Nkhi, T.Motloi, R.Jedrzejczak, N.Feto, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.26 / 1.63
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 49.870, 49.870, 141.625, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. (pdb code 6nkc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome., PDB code: 6nkc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6nkc

Go back to Chlorine Binding Sites List in 6nkc
Chlorine binding site 1 out of 2 in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl200

b:22.4
occ:1.00
O A:HOH363 3.2 20.0 1.0
N A:HIS152 3.2 14.8 1.0
N A:TYR130 3.3 17.1 1.0
O A:HOH407 3.3 23.9 1.0
CB A:HIS152 3.7 15.9 1.0
CB A:SER151 3.8 15.8 1.0
CB A:TYR130 3.8 18.6 1.0
O A:SER128 4.0 20.3 1.0
CA A:SER151 4.0 15.4 1.0
CA A:TYR130 4.0 18.1 1.0
CD2 A:TYR130 4.1 21.2 1.0
CA A:HIS152 4.1 14.6 1.0
C A:SER151 4.1 15.0 1.0
CG1 A:ILE131 4.1 19.6 1.0
CG A:TYR130 4.2 19.9 1.0
C A:ASP129 4.3 18.7 1.0
CA A:ASP129 4.3 17.3 1.0
N A:ILE131 4.3 17.0 1.0
C A:TYR130 4.5 18.4 1.0
OD1 A:ASP129 4.5 15.8 1.0
OG A:SER151 4.8 15.1 1.0
CD1 A:ILE131 4.9 22.3 1.0
C A:SER128 4.9 18.7 1.0

Chlorine binding site 2 out of 2 in 6nkc

Go back to Chlorine Binding Sites List in 6nkc
Chlorine binding site 2 out of 2 in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl200

b:22.5
occ:1.00
O B:HOH353 3.2 20.3 1.0
N B:HIS152 3.3 14.9 1.0
N B:TYR130 3.3 16.9 1.0
O B:HOH486 3.3 31.3 1.0
O B:HOH413 3.3 24.3 1.0
CB B:HIS152 3.7 16.2 1.0
CB B:SER151 3.8 15.6 1.0
CB B:TYR130 3.8 19.0 1.0
O B:SER128 3.9 21.4 1.0
CA B:SER151 4.0 15.8 1.0
CA B:TYR130 4.0 18.5 1.0
CD2 B:TYR130 4.0 21.5 1.0
CA B:HIS152 4.1 14.4 1.0
C B:SER151 4.1 15.0 1.0
CG B:TYR130 4.2 21.3 1.0
CG1 B:ILE131 4.2 19.2 1.0
C B:ASP129 4.2 19.2 1.0
CA B:ASP129 4.3 17.9 1.0
N B:ILE131 4.3 16.9 1.0
C B:TYR130 4.4 18.7 1.0
OD1 B:ASP129 4.5 16.2 1.0
OG B:SER151 4.8 15.6 1.0
C B:SER128 4.9 19.9 1.0
CD1 B:ILE131 4.9 21.2 1.0

Reference:

Y.Kim, L.Welk, R.Jedrzejczak, A.Feto, A.Joachimiak. Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. To Be Published.
Page generated: Sat Dec 12 13:24:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy