Chlorine in PDB 6nxv: Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Protein crystallography data
The structure of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form, PDB code: 6nxv
was solved by
E.Hilario,
S.De Keyser,
L.Fan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.81 /
2.75
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.159,
105.500,
124.320,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.4 /
24.1
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
25;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
(pdb code 6nxv). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 25 binding sites of Chlorine where determined in the
Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form, PDB code: 6nxv:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 1 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:74.2
occ:1.00
|
OH
|
A:TYR74
|
3.7
|
46.9
|
1.0
|
O
|
A:ASP60
|
4.0
|
58.2
|
1.0
|
OD2
|
A:ASP60
|
4.3
|
58.1
|
1.0
|
CB
|
B:ALA89
|
4.3
|
39.3
|
1.0
|
CG
|
A:ASP60
|
4.5
|
56.4
|
1.0
|
OD1
|
A:ASP60
|
4.6
|
56.2
|
1.0
|
C
|
A:ASP60
|
4.8
|
55.5
|
1.0
|
CZ
|
A:TYR74
|
5.0
|
46.6
|
1.0
|
|
Chlorine binding site 2 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 2 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:66.4
occ:1.00
|
OE2
|
A:GLU181
|
2.7
|
65.5
|
1.0
|
OE1
|
A:GLU181
|
3.1
|
55.6
|
1.0
|
CD
|
A:GLU181
|
3.2
|
60.5
|
1.0
|
CG
|
A:GLU181
|
4.6
|
57.4
|
1.0
|
|
Chlorine binding site 3 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 3 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:56.5
occ:1.00
|
NE1
|
A:TRP66
|
2.7
|
84.8
|
1.0
|
CD1
|
A:TRP66
|
2.9
|
74.9
|
1.0
|
CE2
|
A:TRP66
|
3.6
|
80.7
|
1.0
|
CG
|
A:TRP66
|
3.8
|
70.9
|
1.0
|
CB
|
B:ARG96
|
3.9
|
34.9
|
1.0
|
CD
|
B:ARG96
|
4.0
|
40.2
|
1.0
|
CG
|
B:ARG96
|
4.0
|
41.0
|
1.0
|
CD2
|
A:TRP66
|
4.1
|
76.1
|
1.0
|
O
|
B:ARG96
|
4.2
|
38.5
|
1.0
|
N
|
A:TRP66
|
4.4
|
44.5
|
1.0
|
CZ2
|
A:TRP66
|
4.4
|
77.2
|
1.0
|
CB
|
A:GLU67
|
4.4
|
41.6
|
1.0
|
C
|
B:ARG96
|
4.5
|
37.4
|
1.0
|
O
|
A:TRP66
|
4.5
|
50.2
|
1.0
|
C
|
A:TRP66
|
4.5
|
44.3
|
1.0
|
CD1
|
B:TRP100
|
4.7
|
39.5
|
1.0
|
CB
|
B:TRP100
|
4.7
|
39.5
|
1.0
|
CA
|
A:TRP66
|
4.8
|
49.2
|
1.0
|
CA
|
B:ARG96
|
4.8
|
34.6
|
1.0
|
CB
|
A:TRP66
|
4.9
|
56.2
|
1.0
|
N
|
A:GLU67
|
4.9
|
38.1
|
1.0
|
OE1
|
A:GLU67
|
4.9
|
45.8
|
1.0
|
NE
|
B:ARG96
|
4.9
|
40.1
|
1.0
|
CG
|
B:TRP100
|
5.0
|
38.9
|
1.0
|
|
Chlorine binding site 4 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 4 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:46.2
occ:0.45
|
CL
|
A:CL304
|
0.0
|
46.2
|
0.5
|
CL
|
A:CL304
|
2.7
|
47.5
|
0.6
|
N
|
A:SER13
|
3.7
|
41.4
|
1.0
|
OG
|
A:SER13
|
3.7
|
51.9
|
1.0
|
CB
|
A:SER13
|
4.1
|
44.6
|
1.0
|
CA
|
A:SER12
|
4.5
|
43.4
|
1.0
|
CD2
|
A:PHE113
|
4.5
|
68.9
|
1.0
|
NH2
|
A:ARG118
|
4.5
|
72.8
|
1.0
|
CA
|
A:SER13
|
4.5
|
45.6
|
1.0
|
C
|
A:SER12
|
4.6
|
42.9
|
1.0
|
CE2
|
A:PHE113
|
4.6
|
68.3
|
1.0
|
OG
|
A:SER12
|
4.7
|
45.1
|
1.0
|
CE1
|
A:PHE168
|
4.8
|
44.3
|
1.0
|
O
|
A:ASN11
|
4.9
|
54.4
|
1.0
|
|
Chlorine binding site 5 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 5 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:47.5
occ:0.55
|
CL
|
A:CL304
|
0.0
|
47.5
|
0.6
|
CL
|
A:CL304
|
2.7
|
46.2
|
0.5
|
OG
|
A:SER13
|
3.0
|
51.9
|
1.0
|
CD2
|
A:PHE113
|
3.4
|
68.9
|
1.0
|
CE2
|
A:PHE109
|
3.5
|
44.5
|
1.0
|
CG
|
A:PHE113
|
3.5
|
64.7
|
1.0
|
CE2
|
A:PHE113
|
3.8
|
68.3
|
1.0
|
CB
|
A:PHE113
|
4.0
|
57.9
|
1.0
|
CD1
|
A:PHE113
|
4.0
|
54.8
|
1.0
|
CB
|
A:SER13
|
4.1
|
44.6
|
1.0
|
CZ
|
A:PHE113
|
4.2
|
68.0
|
1.0
|
CD2
|
A:PHE109
|
4.2
|
48.4
|
1.0
|
CE1
|
A:PHE113
|
4.3
|
66.0
|
1.0
|
CE1
|
A:PHE168
|
4.4
|
44.3
|
1.0
|
CZ
|
A:PHE109
|
4.4
|
44.2
|
1.0
|
CB
|
A:ALA171
|
4.5
|
47.1
|
1.0
|
CD1
|
A:PHE168
|
4.5
|
44.6
|
1.0
|
N
|
A:SER13
|
4.8
|
41.4
|
1.0
|
|
Chlorine binding site 6 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 6 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:64.4
occ:1.00
|
OE1
|
A:GLN186
|
4.2
|
40.6
|
1.0
|
NE2
|
A:GLN186
|
4.2
|
39.4
|
1.0
|
CD
|
A:GLN186
|
4.5
|
36.5
|
1.0
|
OE1
|
A:GLU181
|
4.9
|
55.6
|
1.0
|
|
Chlorine binding site 7 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 7 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl306
b:84.0
occ:1.00
|
O
|
A:HOH446
|
3.5
|
64.9
|
1.0
|
O
|
A:TYR152
|
3.6
|
40.1
|
1.0
|
CB
|
A:GLN150
|
3.7
|
56.1
|
1.0
|
O
|
A:ALA146
|
3.8
|
48.5
|
1.0
|
CG
|
A:GLN150
|
3.9
|
66.7
|
1.0
|
O
|
A:LEU153
|
4.2
|
40.2
|
1.0
|
NH1
|
A:ARG96
|
4.4
|
67.7
|
1.0
|
CB
|
A:ALA146
|
4.4
|
37.8
|
1.0
|
C
|
A:ALA146
|
4.5
|
43.5
|
1.0
|
CA
|
A:LEU153
|
4.6
|
40.8
|
1.0
|
C
|
A:LEU153
|
4.6
|
40.0
|
1.0
|
C
|
A:TYR152
|
4.6
|
41.4
|
1.0
|
O
|
A:HOH420
|
4.6
|
53.9
|
1.0
|
N
|
A:GLN150
|
4.7
|
54.0
|
1.0
|
CA
|
A:GLN150
|
4.7
|
54.2
|
1.0
|
CD
|
A:GLN150
|
4.7
|
72.1
|
1.0
|
NE1
|
A:TRP97
|
4.8
|
37.7
|
1.0
|
CA
|
A:ALA146
|
4.8
|
40.3
|
1.0
|
N
|
A:GLY155
|
4.9
|
44.9
|
1.0
|
O
|
A:GLN150
|
4.9
|
47.1
|
1.0
|
|
Chlorine binding site 8 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 8 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:70.8
occ:1.00
|
OG
|
B:SER13
|
3.2
|
53.5
|
1.0
|
CD2
|
B:PHE113
|
3.8
|
55.9
|
1.0
|
O
|
B:HOH423
|
3.9
|
64.5
|
1.0
|
CG
|
B:PHE113
|
4.0
|
49.5
|
1.0
|
CE2
|
B:PHE113
|
4.0
|
50.6
|
1.0
|
CB
|
B:SER13
|
4.0
|
43.4
|
1.0
|
N
|
B:SER13
|
4.3
|
44.7
|
1.0
|
CD1
|
B:PHE113
|
4.4
|
52.0
|
1.0
|
CZ
|
B:PHE113
|
4.4
|
47.8
|
1.0
|
CE2
|
B:PHE109
|
4.4
|
44.6
|
1.0
|
CE1
|
B:PHE168
|
4.5
|
41.6
|
1.0
|
CB
|
B:PHE113
|
4.5
|
47.5
|
1.0
|
CE1
|
B:PHE113
|
4.6
|
49.5
|
1.0
|
CD1
|
B:PHE168
|
4.7
|
42.3
|
1.0
|
CG
|
B:ARG110
|
4.7
|
51.3
|
1.0
|
CA
|
B:SER13
|
4.8
|
46.5
|
1.0
|
CB
|
B:ALA171
|
4.9
|
43.7
|
1.0
|
NH1
|
B:ARG118
|
4.9
|
66.7
|
1.0
|
O
|
B:ASN11
|
5.0
|
58.9
|
1.0
|
|
Chlorine binding site 9 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 9 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:75.1
occ:1.00
|
N
|
B:ALA205
|
3.9
|
56.6
|
1.0
|
C
|
B:THR204
|
4.0
|
54.1
|
1.0
|
O
|
B:DMS301
|
4.1
|
66.9
|
1.0
|
O
|
B:MET203
|
4.3
|
56.5
|
1.0
|
CA
|
B:THR204
|
4.3
|
50.0
|
1.0
|
CA
|
B:ALA205
|
4.4
|
54.4
|
1.0
|
O
|
B:THR204
|
4.4
|
53.9
|
1.0
|
O
|
C:ALA148
|
4.5
|
49.6
|
1.0
|
C
|
B:MET203
|
4.9
|
50.2
|
1.0
|
|
Chlorine binding site 10 out
of 25 in 6nxv
Go back to
Chlorine Binding Sites List in 6nxv
Chlorine binding site 10 out
of 25 in the Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:90.1
occ:1.00
|
O
|
D:HOH406
|
3.0
|
55.5
|
1.0
|
O
|
B:HOH402
|
3.4
|
44.9
|
1.0
|
CE
|
D:MET1
|
3.8
|
65.2
|
1.0
|
NH2
|
B:ARG191
|
3.8
|
37.2
|
1.0
|
CB
|
B:ALA187
|
4.4
|
39.4
|
1.0
|
O
|
D:PRO2
|
4.4
|
69.2
|
1.0
|
NH1
|
B:ARG191
|
4.4
|
39.8
|
1.0
|
CB
|
D:MET1
|
4.5
|
79.2
|
1.0
|
CZ
|
B:ARG191
|
4.6
|
40.8
|
1.0
|
O
|
B:LEU147
|
4.6
|
48.0
|
1.0
|
O
|
D:MET1
|
4.7
|
78.3
|
1.0
|
CD2
|
B:HIS184
|
4.7
|
48.8
|
1.0
|
SD
|
D:MET1
|
4.9
|
80.3
|
1.0
|
OG1
|
D:THR5
|
4.9
|
56.4
|
1.0
|
|
Reference:
E.Hilario,
S.De Keyser,
L.Fan.
Crystal Structure of the Theta Class Glutathione S-Transferase From the Citrus Canker Pathogen Xanthomonas Axonopodis Pv. Citri, Apo Form To Be Published.
Page generated: Mon Jul 29 12:19:38 2024
|