Chlorine in PDB 6o3x: Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2

The structure of Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2, PDB code: 6o3x was solved by Y.Zhang, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.35 / 1.99
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	98.690, 102.400, 115.360, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 22.6

The binding sites of Chlorine atom in the Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2 (pdb code 6o3x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2, PDB code: 6o3x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:23.9 occ:1.00 O B:HOH227 3.1 27.9 1.0 O B:HOH214 3.1 24.6 1.0 O A:HOH340 3.1 20.7 1.0 ND2 A:ASN83 3.2 23.3 1.0 O A:GLU79 3.7 22.5 1.0 C A:GLU79 3.7 23.2 1.0 CA A:THR80 3.7 20.3 1.0 N A:THR80 3.8 18.8 1.0 CB A:ASN83 3.9 26.0 1.0 CB A:CYS94 3.9 23.5 1.0 CB A:ASN85 4.0 36.1 1.0 CB A:GLU79 4.0 21.3 1.0 CB B:SER140 4.0 19.4 1.0 CG A:ASN83 4.0 28.8 1.0 SG A:CYS94 4.1 23.3 1.0 CG2 A:THR80 4.2 17.0 1.0 OG B:SER140 4.4 22.5 1.0 CG A:ASN85 4.4 42.2 1.0 CA A:GLU79 4.5 20.3 1.0 CB A:THR80 4.5 25.1 1.0 N A:CYS94 4.7 20.5 1.0 OE1 B:GLN138 4.7 30.2 1.0 OD1 A:ASN85 4.8 40.8 1.0 C A:THR80 4.8 22.6 1.0 N B:SER140 4.9 20.9 1.0 CA A:CYS94 4.9 20.8 1.0 CA B:SER140 4.9 24.6 1.0 ND2 A:ASN85 5.0 47.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Yeast NRD1 Cid in Complex with SEN1 NIM2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl201 b:23.2 occ:1.00 O C:HOH349 3.1 26.4 1.0 O C:HOH318 3.2 23.4 1.0 OD1 C:ASN83 3.2 28.5 1.0 C C:GLU79 3.7 23.3 1.0 O C:GLU79 3.7 25.3 1.0 N C:THR80 3.7 18.8 1.0 CA C:THR80 3.7 21.4 1.0 CB C:CYS94 3.8 20.6 1.0 CB C:ASN85 3.9 36.1 1.0 CB C:GLU79 3.9 18.7 1.0 CB C:ASN83 3.9 21.7 1.0 SG C:CYS94 4.0 23.8 1.0 CG C:ASN83 4.0 29.3 1.0 CG2 C:THR80 4.1 19.1 1.0 CG C:ASN85 4.4 49.1 1.0 CA C:GLU79 4.4 18.4 1.0 CB C:THR80 4.5 22.1 1.0 N C:CYS94 4.6 20.0 1.0 OD1 C:ASN85 4.8 55.4 1.0 CA C:CYS94 4.8 18.7 1.0 C C:THR80 4.9 22.4 1.0 ND2 C:ASN85 5.0 48.3 1.0

Y.Zhang, Y.Chun, S.Buratowski, L.Tong. Identification of Three Sequence Motifs in the Transcription Termination Factor SEN1 That Mediate Direct Interactions with NRD1. Structure V. 27 1156 2019.
ISSN: ISSN 0969-2126
PubMed: 31104813
DOI: 10.1016/J.STR.2019.04.005