Chlorine in PDB 6o4u: Co-Crystal Structure of MCL1 with Inhibitor
Protein crystallography data
The structure of Co-Crystal Structure of MCL1 with Inhibitor, PDB code: 6o4u
was solved by
X.Huang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
36.833,
89.162,
42.721,
90.00,
106.24,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Co-Crystal Structure of MCL1 with Inhibitor
(pdb code 6o4u). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Co-Crystal Structure of MCL1 with Inhibitor, PDB code: 6o4u:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6o4u
Go back to
Chlorine Binding Sites List in 6o4u
Chlorine binding site 1 out
of 4 in the Co-Crystal Structure of MCL1 with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Co-Crystal Structure of MCL1 with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:26.6
occ:1.00
|
CL1
|
A:LMV401
|
0.0
|
26.6
|
1.0
|
C5
|
A:LMV401
|
1.7
|
21.4
|
1.0
|
C6
|
A:LMV401
|
2.6
|
21.8
|
1.0
|
C24
|
A:LMV401
|
2.8
|
19.7
|
1.0
|
C18
|
A:LMV401
|
3.1
|
18.1
|
1.0
|
C12
|
A:LMV401
|
3.5
|
18.3
|
1.0
|
CE
|
A:MET231
|
3.7
|
16.9
|
1.0
|
C21
|
A:LMV401
|
3.9
|
21.8
|
1.0
|
CG1
|
A:VAL249
|
3.9
|
27.1
|
1.0
|
C23
|
A:LMV401
|
4.1
|
20.1
|
1.0
|
N
|
A:MET250
|
4.1
|
18.7
|
1.0
|
CB
|
A:VAL249
|
4.2
|
23.5
|
1.0
|
CE2
|
A:PHE270
|
4.2
|
16.6
|
1.0
|
CA
|
A:MET250
|
4.2
|
19.2
|
1.0
|
CD2
|
A:PHE270
|
4.3
|
16.7
|
1.0
|
CD1
|
A:LEU235
|
4.4
|
19.6
|
1.0
|
O1
|
A:LMV401
|
4.4
|
16.5
|
1.0
|
C
|
A:VAL249
|
4.5
|
20.1
|
1.0
|
N1
|
A:LMV401
|
4.5
|
17.4
|
1.0
|
CB
|
A:MET250
|
4.5
|
21.3
|
1.0
|
C22
|
A:LMV401
|
4.5
|
21.9
|
1.0
|
O
|
A:LEU246
|
4.6
|
19.0
|
1.0
|
CD2
|
A:LEU246
|
4.6
|
23.5
|
1.0
|
CG
|
A:MET250
|
4.8
|
22.5
|
1.0
|
O
|
A:VAL249
|
4.9
|
18.0
|
1.0
|
CG2
|
A:VAL253
|
5.0
|
19.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6o4u
Go back to
Chlorine Binding Sites List in 6o4u
Chlorine binding site 2 out
of 4 in the Co-Crystal Structure of MCL1 with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Co-Crystal Structure of MCL1 with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:21.9
occ:1.00
|
CL2
|
A:LMV401
|
0.0
|
21.9
|
1.0
|
C21
|
A:LMV401
|
1.7
|
21.8
|
1.0
|
C6
|
A:LMV401
|
2.6
|
21.8
|
1.0
|
C22
|
A:LMV401
|
2.7
|
21.9
|
1.0
|
CD1
|
A:LEU290
|
3.4
|
22.0
|
1.0
|
CE
|
A:MET250
|
3.8
|
23.9
|
1.0
|
CG2
|
A:VAL274
|
3.8
|
16.6
|
1.0
|
C5
|
A:LMV401
|
3.9
|
21.4
|
1.0
|
C23
|
A:LMV401
|
4.0
|
20.1
|
1.0
|
CD1
|
A:LEU246
|
4.0
|
19.7
|
1.0
|
CA
|
A:GLY271
|
4.0
|
16.4
|
1.0
|
CD1
|
A:ILE294
|
4.1
|
16.1
|
1.0
|
CB
|
A:VAL274
|
4.2
|
14.2
|
1.0
|
CG
|
A:LEU290
|
4.3
|
20.6
|
1.0
|
CG1
|
A:ILE294
|
4.4
|
14.3
|
1.0
|
CD2
|
A:LEU290
|
4.4
|
22.1
|
1.0
|
C24
|
A:LMV401
|
4.5
|
19.7
|
1.0
|
CG1
|
A:VAL274
|
4.5
|
15.8
|
1.0
|
CD2
|
A:PHE270
|
4.6
|
16.7
|
1.0
|
N
|
A:GLY271
|
4.7
|
15.6
|
1.0
|
CB
|
A:LEU246
|
4.7
|
19.2
|
1.0
|
CG
|
A:LEU246
|
4.7
|
20.3
|
1.0
|
SD
|
A:MET250
|
4.7
|
24.4
|
1.0
|
CD2
|
A:LEU246
|
4.7
|
23.5
|
1.0
|
O
|
A:PHE270
|
4.8
|
15.5
|
1.0
|
CE2
|
A:PHE270
|
4.9
|
16.6
|
1.0
|
C
|
A:PHE270
|
5.0
|
15.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6o4u
Go back to
Chlorine Binding Sites List in 6o4u
Chlorine binding site 3 out
of 4 in the Co-Crystal Structure of MCL1 with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Co-Crystal Structure of MCL1 with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:26.6
occ:1.00
|
CL1
|
B:LMV401
|
0.0
|
26.6
|
1.0
|
C5
|
B:LMV401
|
1.8
|
20.6
|
1.0
|
C6
|
B:LMV401
|
2.7
|
22.8
|
1.0
|
C24
|
B:LMV401
|
2.8
|
20.8
|
1.0
|
C18
|
B:LMV401
|
3.1
|
18.6
|
1.0
|
C12
|
B:LMV401
|
3.3
|
18.3
|
1.0
|
CE
|
B:MET231
|
3.6
|
17.7
|
1.0
|
CG2
|
B:VAL249
|
3.6
|
23.5
|
1.0
|
CG1
|
B:VAL249
|
3.9
|
24.2
|
1.0
|
C21
|
B:LMV401
|
4.0
|
22.2
|
1.0
|
C23
|
B:LMV401
|
4.1
|
18.6
|
1.0
|
N
|
B:MET250
|
4.2
|
19.6
|
1.0
|
CA
|
B:MET250
|
4.3
|
19.9
|
1.0
|
CE2
|
B:PHE270
|
4.3
|
15.8
|
1.0
|
N1
|
B:LMV401
|
4.4
|
18.6
|
1.0
|
CB
|
B:VAL249
|
4.4
|
21.5
|
1.0
|
CD2
|
B:PHE270
|
4.4
|
16.2
|
1.0
|
CD1
|
B:LEU235
|
4.5
|
23.1
|
1.0
|
O1
|
B:LMV401
|
4.5
|
18.6
|
1.0
|
CG
|
B:MET250
|
4.5
|
24.2
|
1.0
|
C
|
B:VAL249
|
4.6
|
19.4
|
1.0
|
CG2
|
B:VAL253
|
4.6
|
21.5
|
1.0
|
C22
|
B:LMV401
|
4.6
|
22.2
|
1.0
|
O
|
B:LEU246
|
4.6
|
20.8
|
1.0
|
CB
|
B:MET250
|
4.7
|
21.0
|
1.0
|
CD2
|
B:LEU246
|
4.9
|
24.0
|
1.0
|
C20
|
B:LMV401
|
4.9
|
18.2
|
1.0
|
O
|
B:VAL249
|
5.0
|
19.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6o4u
Go back to
Chlorine Binding Sites List in 6o4u
Chlorine binding site 4 out
of 4 in the Co-Crystal Structure of MCL1 with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Co-Crystal Structure of MCL1 with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:24.4
occ:1.00
|
CL2
|
B:LMV401
|
0.0
|
24.4
|
1.0
|
C21
|
B:LMV401
|
1.7
|
22.2
|
1.0
|
C6
|
B:LMV401
|
2.6
|
22.8
|
1.0
|
C22
|
B:LMV401
|
2.7
|
22.2
|
1.0
|
CD1
|
B:LEU290
|
3.8
|
24.1
|
1.0
|
C5
|
B:LMV401
|
3.9
|
20.6
|
1.0
|
CA
|
B:GLY271
|
3.9
|
18.9
|
1.0
|
CE
|
B:MET250
|
3.9
|
26.1
|
1.0
|
C23
|
B:LMV401
|
3.9
|
18.6
|
1.0
|
CG2
|
B:VAL274
|
4.0
|
18.1
|
1.0
|
CD1
|
B:LEU246
|
4.0
|
21.9
|
1.0
|
CD1
|
B:ILE294
|
4.1
|
16.7
|
1.0
|
CG
|
B:LEU290
|
4.2
|
22.1
|
1.0
|
CD2
|
B:LEU290
|
4.3
|
23.5
|
1.0
|
CG1
|
B:ILE294
|
4.3
|
15.7
|
1.0
|
CB
|
B:VAL274
|
4.4
|
18.3
|
1.0
|
C24
|
B:LMV401
|
4.4
|
20.8
|
1.0
|
N
|
B:GLY271
|
4.5
|
17.5
|
1.0
|
CD2
|
B:PHE270
|
4.6
|
16.2
|
1.0
|
SD
|
B:MET250
|
4.6
|
26.1
|
1.0
|
CG1
|
B:VAL274
|
4.7
|
19.1
|
1.0
|
CD2
|
B:LEU246
|
4.7
|
24.0
|
1.0
|
O
|
B:PHE270
|
4.8
|
16.8
|
1.0
|
CG
|
B:LEU246
|
4.8
|
22.5
|
1.0
|
CB
|
B:LEU246
|
4.9
|
21.1
|
1.0
|
C
|
B:PHE270
|
4.9
|
17.5
|
1.0
|
CE2
|
B:PHE270
|
5.0
|
15.8
|
1.0
|
|
Reference:
X.Huang,
X.Huang.
N/A N/A.
Page generated: Mon Jul 29 12:29:12 2024
|