Chlorine in PDB 6o55: Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila

Enzymatic activity of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila

All present enzymatic activity of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila:
5.4.99.18;

Protein crystallography data

The structure of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila, PDB code: 6o55 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.34 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 137.280, 88.560, 52.510, 90.00, 111.77, 90.00
R / Rfree (%) 14.8 / 18.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila (pdb code 6o55). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila, PDB code: 6o55:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6o55

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Chlorine binding site 1 out of 4 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:31.3
occ:1.00
 O A:HOH402 2.4 33.8 1.0
O A:HOH317 2.9 34.5 1.0
N A:LYS46 3.3 21.4 1.0
CA A:THR43 3.3 18.7 1.0
C A:THR43 3.4 19.8 1.0
N A:ASP45 3.5 18.3 1.0
CB A:ASP45 3.6 20.9 1.0
CB A:THR43 3.6 22.4 1.0
O A:THR43 3.8 21.9 1.0
CA A:ASP45 3.9 19.4 1.0
N A:PRO44 3.9 18.4 1.0
CB A:LYS46 4.0 25.1 1.0
C A:ASP45 4.0 24.9 1.0
CG2 B:THR152 4.1 19.6 1.0
CD2 B:LEU156 4.1 29.3 1.0
CA A:LYS46 4.2 23.4 1.0
CD A:PRO44 4.3 21.4 1.0
CG2 A:THR43 4.3 22.5 1.0
CD1 B:LEU156 4.3 26.5 1.0
C A:PRO44 4.4 19.8 1.0
CG A:ASP45 4.4 27.0 1.0
OD2 A:ASP45 4.5 33.5 1.0
CG B:LEU156 4.6 22.6 1.0
NH2 A:ARG49 4.6 26.4 0.4
N A:THR43 4.7 19.3 1.0
O A:ARG42 4.7 18.3 1.0
CA A:PRO44 4.7 17.0 1.0
OG1 A:THR43 4.8 21.2 1.0
NH1 A:ARG49 5.0 21.8 0.4
CG A:PRO44 5.0 18.7 1.0

Chlorine binding site 2 out of 4 in 6o55

Go back to Chlorine Binding Sites List in 6o55
Chlorine binding site 2 out of 4 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:31.7
occ:1.00
 O B:HOH371 2.7 31.4 1.0
O B:HOH334 3.0 29.0 1.0
N B:LYS46 3.2 19.0 1.0
CA B:THR43 3.3 19.7 1.0
C B:THR43 3.4 22.4 1.0
N B:ASP45 3.4 17.3 1.0
CB B:THR43 3.5 19.3 1.0
CB B:ASP45 3.5 20.9 1.0
O B:THR43 3.7 20.2 1.0
CA B:ASP45 3.8 20.1 1.0
CB B:LYS46 3.9 18.6 1.0
N B:PRO44 3.9 18.7 1.0
C B:ASP45 3.9 18.3 1.0
CD2 C:LEU156 4.0 24.5 1.0
CA B:LYS46 4.1 17.4 1.0
CG2 C:THR152 4.3 23.6 1.0
CG2 B:THR43 4.3 21.7 1.0
OD2 B:ASP45 4.3 41.3 1.0
CD1 C:LEU156 4.3 21.7 1.0
CG B:ASP45 4.4 27.6 1.0
C B:PRO44 4.4 14.8 1.0
CD B:PRO44 4.4 21.7 1.0
CG C:LEU156 4.5 19.0 1.0
N B:THR43 4.7 18.8 1.0
O B:ARG42 4.7 20.1 1.0
OG1 B:THR43 4.7 19.6 1.0
NH2 B:ARG49 4.7 55.2 1.0
CA B:PRO44 4.8 16.1 1.0
NH1 B:ARG49 4.9 41.7 1.0

Chlorine binding site 3 out of 4 in 6o55

Go back to Chlorine Binding Sites List in 6o55
Chlorine binding site 3 out of 4 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:26.9
occ:1.00
 O C:HOH395 2.9 23.0 1.0
O C:HOH401 3.0 35.0 1.0
CA C:THR43 3.2 16.4 1.0
N C:LYS46 3.3 17.2 1.0
C C:THR43 3.3 18.6 1.0
N C:ASP45 3.3 18.9 1.0
CB C:THR43 3.5 17.7 1.0
CB C:ASP45 3.6 17.7 1.0
O C:THR43 3.7 16.8 1.0
N C:PRO44 3.7 17.6 1.0
CA C:ASP45 3.8 15.0 1.0
C C:ASP45 4.0 20.1 1.0
CB C:LYS46 4.1 16.6 1.0
CD C:PRO44 4.1 15.5 1.0
CD2 D:LEU156 4.1 21.8 1.0
CG2 D:THR152 4.2 17.2 1.0
CA C:LYS46 4.2 19.4 1.0
C C:PRO44 4.3 15.2 1.0
CG2 C:THR43 4.3 19.9 1.0
CG C:ASP45 4.4 25.3 1.0
OD2 C:ASP45 4.5 34.9 1.0
CD1 D:LEU156 4.5 21.9 1.0
N C:THR43 4.6 14.6 1.0
CA C:PRO44 4.6 14.4 1.0
O C:ARG42 4.6 18.3 1.0
CG D:LEU156 4.7 21.3 1.0
NH2 C:ARG49 4.7 24.7 1.0
OG1 C:THR43 4.7 16.4 1.0
CG C:PRO44 4.8 16.6 1.0
NH1 C:ARG49 4.9 23.8 1.0

Chlorine binding site 4 out of 4 in 6o55

Go back to Chlorine Binding Sites List in 6o55
Chlorine binding site 4 out of 4 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl203

b:33.7
occ:1.00
 O D:HOH412 2.6 30.8 1.0
O D:HOH445 2.7 40.2 1.0
N D:LYS46 3.1 21.0 1.0
CA D:THR43 3.3 22.9 1.0
C D:THR43 3.4 21.7 1.0
N D:ASP45 3.4 19.6 1.0
CB D:THR43 3.5 23.2 1.0
CB D:ASP45 3.5 23.1 1.0
O D:THR43 3.7 22.1 1.0
CA D:ASP45 3.8 24.8 1.0
CB D:LYS46 3.8 24.8 1.0
N D:PRO44 3.9 21.0 1.0
C D:ASP45 3.9 24.1 1.0
CD2 A:LEU156 4.1 26.3 1.0
CA D:LYS46 4.1 22.5 1.0
CG2 A:THR152 4.2 23.0 1.0
CG2 D:THR43 4.3 23.7 1.0
CD D:PRO44 4.3 22.5 1.0
O D:HOH428 4.3 40.8 1.0
C D:PRO44 4.3 18.8 1.0
CD1 A:LEU156 4.4 28.3 1.0
CG D:ASP45 4.5 34.3 1.0
OD2 D:ASP45 4.6 39.5 1.0
CG A:LEU156 4.6 26.6 1.0
N D:THR43 4.6 21.1 1.0
O D:ARG42 4.7 23.5 1.0
OG1 D:THR43 4.7 23.1 1.0
CA D:PRO44 4.7 17.9 1.0

Reference:

M.J.Bolejack, T.E.Edwards, D.D.Lorimer, P.S.Horanyi. Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase (Pure) From Legionella Pneumophila To Be Published.
Page generated: Sat Dec 12 13:26:08 2020

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