Chlorine in PDB 6oew: Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)

Protein crystallography data

The structure of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6oew was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.67 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 65.510, 65.510, 261.930, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.5

Other elements in 6oew:

The structure of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) (pdb code 6oew). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6oew:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6oew

Go back to Chlorine Binding Sites List in 6oew
Chlorine binding site 1 out of 2 in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:40.1
occ:1.00
NH1 A:ARG81 3.1 31.8 1.0
O A:HOH538 3.1 53.9 1.0
O A:HOH480 3.2 57.2 1.0
NH2 A:ARG81 3.4 34.4 1.0
CD A:ARG10 3.6 40.9 1.0
CZ A:ARG81 3.7 33.6 1.0
CG A:ARG10 3.7 37.0 1.0
NE2 A:GLN8 3.8 32.8 1.0
CB A:ARG10 3.9 33.8 1.0
N A:ALA9 4.0 27.9 1.0
C A:ALA9 4.0 25.3 1.0
CB A:GLN8 4.1 36.0 1.0
N A:ARG10 4.2 30.4 1.0
O A:ALA9 4.2 26.9 1.0
CA A:ALA9 4.3 30.4 1.0
C A:GLN8 4.3 25.1 1.0
CD1 A:LEU78 4.4 35.6 1.0
O A:HOH527 4.5 56.6 1.0
CD A:GLN8 4.6 33.1 1.0
CG A:GLN8 4.6 35.0 1.0
CA A:ARG10 4.7 31.4 1.0
CA A:GLN8 4.7 28.1 1.0
O A:GLN8 4.8 28.3 1.0
NE A:ARG10 4.9 37.3 1.0
O A:HOH545 4.9 55.7 1.0
O A:LEU49 4.9 28.0 1.0
NE A:ARG81 5.0 35.2 1.0
CD2 A:LEU78 5.0 33.9 1.0

Chlorine binding site 2 out of 2 in 6oew

Go back to Chlorine Binding Sites List in 6oew
Chlorine binding site 2 out of 2 in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:36.0
occ:1.00
O B:HOH402 2.9 36.8 1.0
NH1 B:ARG81 3.1 29.7 1.0
NH2 B:ARG81 3.4 31.9 1.0
CG B:ARG10 3.7 35.6 1.0
CZ B:ARG81 3.7 32.0 1.0
CD B:ARG10 3.7 35.6 1.0
O2 B:EDO304 3.7 49.6 1.0
N B:ALA9 3.8 32.1 1.0
C B:ALA9 3.9 29.1 1.0
N B:ARG10 3.9 31.0 1.0
NE2 B:GLN8 4.0 30.4 1.0
CB B:ARG10 4.0 29.5 1.0
O B:HOH406 4.0 35.9 0.5
CA B:ALA9 4.1 30.9 1.0
CB B:GLN8 4.2 28.3 1.0
C B:GLN8 4.2 26.5 1.0
O B:ALA9 4.3 28.7 1.0
O B:HOH448 4.3 42.7 1.0
CD1 B:LEU78 4.4 30.3 1.0
C2 B:EDO304 4.5 35.7 1.0
CA B:ARG10 4.6 26.5 1.0
CG B:GLN8 4.7 29.8 1.0
CA B:GLN8 4.7 27.7 1.0
CD B:GLN8 4.7 31.2 1.0
O B:GLN8 4.7 25.3 1.0
CD2 B:LEU78 4.8 30.4 1.0
O B:LEU49 5.0 31.6 1.0
NE B:ARG81 5.0 35.6 1.0

Reference:

J.Abendroth, D.Fox Iii, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) To Be Published.
Page generated: Sat Dec 12 13:26:49 2020

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