Chlorine in PDB 6ona: Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940

The structure of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940, PDB code: 6ona was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.39 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	108.560, 102.250, 160.950, 90.00, 91.07, 90.00
R / Rfree (%)	19.3 / 23

The binding sites of Chlorine atom in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 (pdb code 6ona). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940, PDB code: 6ona:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:37.6 occ:1.00 O A:HOH771 2.9 36.1 1.0 NE A:ARG435 3.2 33.1 1.0 NZ A:LYS380 3.2 32.3 1.0 CE A:LYS380 3.5 31.6 1.0 CG1 B:VAL21 3.8 39.4 1.0 CB A:ARG435 3.8 26.0 1.0 CD A:ARG435 3.9 34.3 1.0 CB B:VAL21 4.1 37.7 1.0 NH2 A:ARG435 4.1 33.4 1.0 CZ A:ARG435 4.1 31.4 1.0 CD2 B:LEU22 4.2 34.6 1.0 CG B:GLU434 4.2 41.7 1.0 CG B:LEU22 4.3 36.0 1.0 O A:HOH698 4.5 23.8 1.0 CG2 B:VAL21 4.5 36.2 1.0 CG A:ARG435 4.5 28.5 1.0 CD1 B:LEU22 4.5 37.6 1.0 CD B:GLU434 4.6 46.5 1.0 O A:ARG435 4.7 35.4 1.0 C A:ARG435 4.7 31.4 1.0 CA A:ARG435 4.9 32.3 1.0 OE1 B:GLU434 4.9 44.2 1.0 CD A:LYS380 5.0 34.5 1.0

Chlorine binding site 2 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl510 b:47.1 occ:1.00 OG1 A:THR29 3.0 36.6 1.0 NE1 A:TRP350 3.2 33.3 1.0 CB A:THR29 3.6 37.8 1.0 CB A:HIS30 3.8 42.4 1.0 CD2 A:HIS10 3.9 48.3 1.0 CD1 A:TRP350 4.0 38.9 1.0 C A:THR29 4.1 38.0 1.0 O A:THR29 4.2 39.3 1.0 CA A:GLY319 4.2 37.2 1.0 CE2 A:TRP350 4.3 32.5 1.0 NE2 A:HIS10 4.3 47.8 1.0 N A:HIS30 4.3 40.5 1.0 O A:HOH670 4.5 51.3 1.0 ND2 A:ASN12 4.5 42.1 1.0 CA A:THR29 4.6 37.9 1.0 CZ2 A:TRP350 4.6 38.1 1.0 CA A:HIS30 4.7 36.9 1.0 CG2 A:THR29 4.8 37.9 1.0 CG A:HIS30 4.9 48.8 1.0 N A:LEU320 5.0 35.7 1.0

Chlorine binding site 3 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl511 b:37.6 occ:1.00 NH2 B:ARG435 3.1 25.5 1.0 NH1 A:ARG435 3.2 32.6 1.0 NH1 C:ARG435 3.3 41.3 1.0 CD1 A:LEU431 3.6 41.0 1.0 CD B:ARG435 3.6 32.9 1.0 CD A:ARG435 3.7 34.3 1.0 CD C:ARG435 3.8 30.3 1.0 CD1 B:LEU431 3.8 51.1 1.0 CG B:ARG435 4.0 28.2 1.0 CG C:ARG435 4.1 30.9 1.0 CD2 B:LEU431 4.1 47.7 1.0 CZ B:ARG435 4.2 36.4 1.0 CG A:ARG435 4.2 28.5 1.0 CZ A:ARG435 4.2 31.4 1.0 CZ C:ARG435 4.3 34.5 1.0 NE B:ARG435 4.3 35.6 1.0 CG B:LEU431 4.3 47.1 1.0 CD2 A:LEU431 4.4 47.9 1.0 NE A:ARG435 4.4 33.1 1.0 CG A:LEU431 4.4 43.8 1.0 NE C:ARG435 4.5 35.5 1.0 CD2 C:LEU431 4.6 57.0 1.0

Chlorine binding site 4 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl510 b:39.2 occ:1.00 O B:HOH803 3.0 40.6 1.0 NE B:ARG435 3.1 35.6 1.0 NZ B:LYS380 3.2 31.0 1.0 CE B:LYS380 3.5 28.9 1.0 CD B:ARG435 3.7 32.9 1.0 CB B:ARG435 3.7 27.3 1.0 CG1 C:VAL21 3.9 34.2 1.0 CZ B:ARG435 4.1 36.4 1.0 CD2 C:LEU22 4.1 29.8 1.0 CG C:LEU22 4.2 34.7 1.0 NH1 B:ARG435 4.2 35.3 1.0 CB C:VAL21 4.3 34.7 1.0 CG B:ARG435 4.3 28.2 1.0 CG C:GLU434 4.3 27.5 1.0 O B:HOH704 4.4 32.0 1.0 CD1 C:LEU22 4.4 34.5 1.0 OE2 B:GLU432 4.6 52.1 1.0 C B:ARG435 4.7 30.4 1.0 O B:ARG435 4.7 27.7 1.0 CD C:GLU434 4.8 39.7 1.0 CG2 C:VAL21 4.8 33.4 1.0 CA B:ARG435 4.8 30.0 1.0

Chlorine binding site 5 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl511 b:49.6 occ:1.00 OG1 B:THR29 3.0 31.3 1.0 NE1 B:TRP350 3.2 29.8 1.0 CB B:THR29 3.6 33.6 1.0 CB B:HIS30 3.9 39.9 1.0 CD2 B:HIS10 3.9 42.7 1.0 CD1 B:TRP350 4.0 33.1 1.0 CA B:GLY319 4.1 37.2 1.0 C B:THR29 4.1 39.6 1.0 O B:THR29 4.2 33.5 1.0 NE2 B:HIS10 4.3 37.0 1.0 CE2 B:TRP350 4.3 32.2 1.0 O B:HOH819 4.4 49.9 1.0 N B:HIS30 4.4 34.4 1.0 CA B:THR29 4.5 36.2 1.0 ND2 B:ASN12 4.6 36.1 1.0 O B:HOH740 4.6 41.6 1.0 CZ2 B:TRP350 4.7 34.2 1.0 CG2 B:THR29 4.7 33.8 1.0 CA B:HIS30 4.8 37.1 1.0 N B:GLY319 4.9 34.4 1.0 CG B:HIS30 4.9 48.5 1.0

Chlorine binding site 6 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl511 b:41.9 occ:1.00 O C:HOH757 2.9 34.5 1.0 NZ C:LYS380 3.2 35.4 1.0 NE C:ARG435 3.2 35.5 1.0 CE C:LYS380 3.5 40.0 1.0 CG1 A:VAL21 3.7 35.0 1.0 CB C:ARG435 3.8 25.3 1.0 CD C:ARG435 3.9 30.3 1.0 CD2 A:LEU22 3.9 30.3 1.0 CG A:LEU22 4.1 32.8 1.0 CB A:VAL21 4.2 33.1 1.0 CZ C:ARG435 4.2 34.5 1.0 O C:HOH702 4.2 27.6 1.0 NH2 C:ARG435 4.3 34.0 1.0 CD1 A:LEU22 4.3 33.6 1.0 CG A:GLU434 4.4 34.8 1.0 CG C:ARG435 4.4 30.9 1.0 O C:ARG435 4.6 35.8 1.0 C C:ARG435 4.6 34.2 1.0 CG2 A:VAL21 4.8 30.3 1.0 CD A:GLU434 4.8 44.4 1.0 CA C:ARG435 4.8 25.5 1.0 CD C:LYS380 5.0 39.7 1.0 OE1 C:GLU432 5.0 50.5 1.0

Chlorine binding site 7 out of 7 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl512 b:52.3 occ:1.00 OG1 C:THR29 3.0 33.8 1.0 NE1 C:TRP350 3.2 31.9 1.0 CB C:THR29 3.6 34.5 1.0 CB C:HIS30 3.8 38.4 1.0 CD2 C:HIS10 4.0 44.4 1.0 CD1 C:TRP350 4.0 36.3 1.0 C C:THR29 4.1 35.9 1.0 O C:THR29 4.1 36.3 1.0 CA C:GLY319 4.1 32.6 1.0 O C:HOH694 4.3 37.8 1.0 N C:HIS30 4.3 39.2 1.0 CE2 C:TRP350 4.3 29.9 1.0 NE2 C:HIS10 4.3 47.0 1.0 ND2 C:ASN12 4.4 43.0 1.0 CA C:THR29 4.5 34.0 1.0 CA C:HIS30 4.7 37.8 1.0 CZ2 C:TRP350 4.7 28.9 1.0 CG2 C:THR29 4.7 34.7 1.0 CG C:HIS30 4.9 45.6 1.0 N C:GLY319 5.0 35.2 1.0 N C:LEU320 5.0 34.0 1.0

D.G.Conrady, S.J.Mayclin, B.Calhoun, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Influenza Hemagglutinin From Strain A/Hickox/JY2/1940 To Be Published.