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Chlorine in PDB 6onc: Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated

Enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated

All present enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated:
1.2.7.4;

Protein crystallography data

The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated, PDB code: 6onc was solved by E.C.Wittenborn, S.E.Cohen, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.27 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.790, 144.150, 123.690, 90.00, 98.50, 90.00
R / Rfree (%) 15.4 / 17.8

Other elements in 6onc:

The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Iron (Fe) 40 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated (pdb code 6onc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated, PDB code: 6onc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6onc

Go back to Chlorine Binding Sites List in 6onc
Chlorine binding site 1 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl707

b:32.2
occ:1.00
 O B:HOH1291 2.9 36.7 1.0
N B:ASN164 3.0 16.3 1.0
N B:ALA165 3.6 15.5 1.0
CB B:ASN164 3.7 24.4 1.0
O B:ALA165 3.8 16.7 1.0
NE B:ARG163 3.8 30.2 1.0
NH1 B:ARG163 3.8 45.4 1.0
CA B:ASN164 3.8 19.4 1.0
CA B:ARG163 3.9 16.5 1.0
C B:ARG163 3.9 16.1 1.0
CZ B:ARG163 3.9 41.5 1.0
CB B:ARG163 4.0 17.7 1.0
C B:ASN164 4.1 18.0 1.0
ND2 B:ASN164 4.2 37.9 1.0
O B:HOH1409 4.3 41.0 1.0
CG B:ASN164 4.4 33.7 1.0
O B:HOH902 4.4 30.0 1.0
O B:HOH1329 4.5 42.7 1.0
O B:HOH1258 4.5 50.5 1.0
CA B:ALA165 4.6 13.2 1.0
C B:ALA165 4.6 15.9 1.0
CD B:ARG163 4.6 26.5 1.0
NH2 B:ARG163 4.8 40.1 1.0
CG B:ARG163 4.9 21.6 1.0
CB B:ALA165 4.9 16.7 1.0

Chlorine binding site 2 out of 2 in 6onc

Go back to Chlorine Binding Sites List in 6onc
Chlorine binding site 2 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl707

b:33.8
occ:1.00
 N C:ASN164 3.0 16.4 1.0
N C:ALA165 3.6 14.8 1.0
NH1 C:ARG163 3.6 45.2 1.0
NE C:ARG163 3.6 31.7 1.0
O C:ALA165 3.7 16.2 1.0
CA C:ASN164 3.8 19.3 1.0
CA C:ARG163 3.9 14.7 1.0
CZ C:ARG163 3.9 40.2 1.0
CB C:ASN164 3.9 23.3 1.0
CB C:ARG163 3.9 15.4 1.0
C C:ARG163 3.9 15.7 1.0
O C:HOH936 4.1 27.1 1.0
C C:ASN164 4.2 16.5 1.0
CA C:ALA165 4.6 14.7 1.0
C C:ALA165 4.6 14.7 1.0
ND2 C:ASN164 4.6 38.9 1.0
CD C:ARG163 4.6 27.3 1.0
CG C:ASN164 4.6 34.5 1.0
O C:HOH1014 4.8 55.0 1.0
CG C:ARG163 4.8 20.2 1.0
CB C:ALA165 4.9 18.5 1.0
NH2 C:ARG163 5.0 36.8 1.0

Reference:

E.C.Wittenborn, S.E.Cohen, M.Merrouch, C.Leger, V.Fourmond, S.Dementin, C.L.Drennan. Structural Insight Into Metallocofactor Maturation in Carbon Monoxide Dehydrogenase. J.Biol.Chem. V. 294 13017 2019.
ISSN: ESSN 1083-351X
PubMed: 31296570
DOI: 10.1074/JBC.RA119.009610
Page generated: Mon Jul 29 12:44:55 2024

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