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Chlorine in PDB 6ovo: Crystal Structure of the Unliganded PG10 Tcr

Protein crystallography data

The structure of Crystal Structure of the Unliganded PG10 Tcr, PDB code: 6ovo was solved by A.Shahine, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.83 / 2.49
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 149.620, 149.620, 55.991, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Unliganded PG10 Tcr (pdb code 6ovo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Unliganded PG10 Tcr, PDB code: 6ovo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6ovo

Go back to Chlorine Binding Sites List in 6ovo
Chlorine binding site 1 out of 2 in the Crystal Structure of the Unliganded PG10 Tcr


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Unliganded PG10 Tcr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:59.8
occ:1.00
N B:HIS182 3.3 60.0 1.0
N B:SER183 3.7 66.4 1.0
CA B:HIS182 4.1 55.5 1.0
CB B:HIS182 4.2 56.0 1.0
CA B:VAL181 4.2 57.6 1.0
C B:VAL181 4.2 59.2 1.0
CB B:SER183 4.4 53.0 1.0
C B:HIS182 4.4 63.1 1.0
CA B:SER183 4.7 55.1 1.0
CB B:VAL181 4.7 51.7 1.0
ND1 B:HIS182 4.8 64.6 1.0
O B:GLU180 4.9 64.8 1.0
CG B:HIS182 5.0 63.6 1.0

Chlorine binding site 2 out of 2 in 6ovo

Go back to Chlorine Binding Sites List in 6ovo
Chlorine binding site 2 out of 2 in the Crystal Structure of the Unliganded PG10 Tcr


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Unliganded PG10 Tcr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:61.3
occ:1.00
NZ B:LYS18 3.2 64.1 1.0
CE B:LYS18 3.6 59.8 1.0
O B:HOH459 3.9 50.7 1.0
CD B:LYS18 4.4 47.8 1.0
CG B:LYS18 4.9 50.9 1.0

Reference:

P.Reinink, A.Shahine, S.Gras, T.Y.Cheng, R.Farquhar, K.Lopez, S.A.Suliman, J.F.Reijneveld, J.Le Nours, L.L.Tan, S.R.Leon, J.Jimenez, R.Calderon, L.Lecca, M.B.Murray, J.Rossjohn, D.B.Moody, I.Van Rhijn. A Tcr Beta-Chain Motif Biases Toward Recognition of Human CD1 Proteins J Immunol. 2019.
ISSN: ESSN 1550-6606
PubMed: 31694911
DOI: 10.4049/JIMMUNOL.1900872
Page generated: Mon Jul 29 12:53:50 2024

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