Chlorine in PDB 6p4w: Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution

The structure of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution, PDB code: 6p4w was solved by L.Fan, F.He, K.T.Duprez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.28 / 2.96
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	56.415, 101.369, 114.476, 83.09, 81.15, 90.17
R / Rfree (%)	18.3 / 23.3

The structure of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Chlorine atom in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution (pdb code 6p4w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 18 binding sites of Chlorine where determined in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution, PDB code: 6p4w:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:73.2 occ:1.00 NZ A:LYS251 3.2 74.2 1.0 OD1 A:ASP255 3.6 57.9 1.0 CA A:GLY427 4.0 81.2 1.0 CG A:LYS251 4.0 54.1 1.0 C A:GLY427 4.1 80.7 1.0 O A:GLY427 4.2 86.1 1.0 CD A:LYS251 4.2 58.8 1.0 CE A:LYS251 4.3 61.8 1.0 OD2 A:ASP255 4.4 68.2 1.0 CG A:ASP255 4.4 59.6 1.0 CD2 A:TYR254 4.6 43.0 1.0 CD1 A:LEU246 4.6 47.5 1.0 N A:THR428 4.6 78.0 1.0 N A:GLY427 4.7 71.0 1.0 CE2 A:TYR254 4.7 50.0 1.0 CB A:LYS251 4.9 51.2 1.0 CG2 A:THR428 5.0 79.9 1.0

Chlorine binding site 2 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl505 b:87.7 occ:1.00 OE2 A:GLU360 3.1 0.2 1.0 OE2 A:GLU357 3.2 93.3 1.0 CG1 A:ILE361 3.6 77.8 1.0 OH A:TYR370 3.7 79.2 1.0 CG B:ARG86 3.9 93.1 1.0 CD A:GLU357 4.0 94.5 1.0 CG A:GLU357 4.0 84.1 1.0 CD1 A:ILE361 4.0 74.5 1.0 CD B:ARG86 4.2 92.2 1.0 CD A:GLU360 4.4 0.8 1.0 CZ A:TYR370 4.6 77.9 1.0 CE2 A:TYR370 4.6 83.7 1.0 CG B:ARG87 4.7 97.3 1.0 N B:ARG87 4.8 0.7 1.0 CA B:ARG87 4.8 0.6 1.0 CG1 B:ILE83 4.9 82.0 1.0 CD2 B:PHE90 5.0 73.3 1.0

Chlorine binding site 3 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl506 b:76.7 occ:1.00 OD2 A:ASP155 3.6 87.8 1.0 CB A:ASP155 3.8 62.4 1.0 CG A:ASP155 4.0 74.3 1.0

Chlorine binding site 4 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl507 b:85.9 occ:1.00 CD1 A:TYR3 3.4 92.3 1.0 N A:ASP14 3.9 67.2 1.0 C A:SER13 4.1 59.0 1.0 O A:TYR3 4.1 65.3 1.0 CE1 A:TYR3 4.1 99.8 1.0 N A:SER13 4.3 54.0 1.0 CG A:TYR3 4.3 89.0 1.0 CA A:SER13 4.3 55.0 1.0 CB A:TYR3 4.4 72.4 1.0 NH1 A:ARG5 4.5 97.3 1.0 C A:LEU12 4.5 57.8 1.0 CB A:LEU12 4.5 46.4 1.0 O A:SER13 4.5 54.5 1.0 CA A:ASP14 4.6 65.1 1.0 CB A:ALA28 4.7 51.6 1.0 O A:LEU12 4.7 65.0 1.0 C A:TYR3 4.7 65.5 1.0 OD1 A:ASP14 4.8 0.8 1.0 CG A:ASP14 4.9 99.9 1.0 CG A:ARG5 5.0 81.1 1.0

Chlorine binding site 5 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl508 b:93.7 occ:1.00 CG2 A:THR353 3.3 0.1 1.0 O A:VAL348 3.5 87.5 1.0 CB A:THR353 4.0 97.3 1.0 CG1 A:VAL348 4.2 59.6 1.0 CD1 B:LEU124 4.2 75.0 1.0 CD2 B:LEU124 4.2 73.2 1.0 OE2 A:GLU357 4.2 93.3 1.0 CD A:GLU357 4.4 94.5 1.0 NH1 B:ARG86 4.5 57.1 1.0 C A:VAL348 4.5 71.3 1.0 OE1 A:GLU357 4.6 90.4 1.0 CA A:THR353 4.8 96.2 1.0 CG B:LEU124 4.8 74.9 1.0 CZ B:ARG86 4.9 73.3 1.0 CD1 A:ILE361 5.0 74.5 1.0

Chlorine binding site 6 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:1.0 occ:1.00 NE A:ARG412 3.3 0.9 1.0 CZ A:ARG412 3.3 0.5 1.0 NH1 A:ARG412 3.4 0.7 1.0 CA A:ALA235 3.6 0.9 1.0 N A:LYS236 3.8 1.0 1.0 O A:LEU229 4.0 80.1 1.0 CD A:ARG412 4.0 0.7 1.0 NH2 A:ARG412 4.0 0.8 1.0 C A:ALA235 4.2 0.6 1.0 CB A:ALA235 4.2 92.2 1.0 O A:ILE234 4.2 0.3 1.0 CB A:LYS236 4.6 0.4 1.0 N A:ALA235 4.6 0.4 1.0 CE2 A:TYR72 4.7 75.9 1.0 CD A:ARG70 4.7 93.6 1.0 CA A:LYS236 4.8 0.1 1.0 NE A:ARG70 4.8 0.9 1.0 C A:ILE234 4.8 0.4 1.0

Chlorine binding site 7 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl510 b:0.1 occ:1.00 NZ A:LYS66 1.4 98.5 1.0 CE A:LYS66 2.9 1.0 1.0 CD A:LYS66 3.8 0.5 1.0 CG A:LYS66 4.8 0.1 1.0

Chlorine binding site 8 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl511 b:0.0 occ:1.00 NH1 A:ARG40 3.1 75.1 1.0 O A:ARG37 3.5 50.0 1.0 CG A:ARG37 3.6 51.4 1.0 CB A:LYS41 3.9 58.8 1.0 CD A:ARG40 4.2 64.6 1.0 N A:LYS41 4.2 56.6 1.0 CZ A:ARG40 4.2 67.9 1.0 C A:ARG37 4.3 52.9 1.0 CA A:ARG37 4.3 52.2 1.0 CD A:ARG37 4.4 60.8 1.0 CA A:LYS41 4.4 58.9 1.0 CG A:ARG40 4.5 64.7 1.0 CB A:ARG37 4.5 53.7 1.0 NE A:ARG37 4.6 69.0 1.0 CB A:ARG40 4.6 64.3 1.0 NE A:ARG40 4.7 72.8 1.0 CG A:LYS41 4.8 61.2 1.0

Chlorine binding site 9 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:0.7 occ:1.00 NZ B:LYS323 3.3 95.5 1.0 OE2 B:GLU310 3.4 0.7 1.0 N B:ILE295 3.5 75.3 1.0 OH B:TYR182 3.5 0.9 1.0 O B:HOH505 3.6 80.7 1.0 CE2 B:TYR182 3.7 96.0 1.0 CZ B:TYR182 3.8 1.0 1.0 OE1 B:GLU310 3.8 81.7 1.0 CD1 B:PHE294 3.9 81.6 0.6 CD B:GLU310 4.0 94.3 1.0 CA B:PHE294 4.1 85.0 0.4 CA B:PHE294 4.2 90.8 0.6 O B:ILE295 4.2 82.7 1.0 O B:VAL293 4.3 100.0 1.0 C B:PHE294 4.3 81.5 0.4 C B:PHE294 4.3 84.6 0.6 CA B:ILE295 4.4 71.2 1.0 CB B:ILE295 4.4 69.1 1.0 C B:ILE295 4.5 81.4 1.0 CE1 B:PHE294 4.5 70.8 0.6 CE B:LYS323 4.6 84.1 1.0 CG1 B:ILE295 4.6 64.8 1.0 CD2 B:TYR182 4.6 76.6 1.0 CD1 B:PHE294 4.7 67.1 0.4 CE1 B:TYR182 4.8 1.0 1.0 CB B:PHE294 4.9 78.5 0.4 CG B:PHE294 4.9 81.3 0.6 CD1 B:ILE295 4.9 59.4 1.0 CB B:PHE294 5.0 87.3 0.6

Chlorine binding site 10 out of 18 in the Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl402 b:0.2 occ:1.00 CG1 B:VAL230 3.8 51.4 1.0 CD1 B:TYR158 3.8 0.3 1.0 CG2 B:VAL230 3.9 45.7 1.0 CE1 B:TYR158 4.1 0.8 1.0 CB B:VAL230 4.3 49.6 1.0 CD B:LYS236 4.6 77.9 1.0 CG B:TYR158 4.7 0.2 1.0 NZ B:LYS236 4.9 0.7 1.0 CB B:ALA197 5.0 86.1 1.0

L.Fan, F.He, K.T.Duprez. Xpb Helicase in A Complex with Truncated BAX1 From Sulfurisphaera Tokodaii at 2.96 Angstrom Resolution To Be Published.