Chlorine in PDB 6p69: Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
Enzymatic activity of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
All present enzymatic activity of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.:
2.7.10.1;
Protein crystallography data
The structure of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11., PDB code: 6p69
was solved by
N.A.Larsen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.11 /
2.20
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
205.365,
58.516,
66.131,
90.00,
107.31,
90.00
|
R / Rfree (%)
|
18.6 /
24.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
(pdb code 6p69). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11., PDB code: 6p69:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6p69
Go back to
Chlorine Binding Sites List in 6p69
Chlorine binding site 1 out
of 4 in the Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl804
b:32.6
occ:1.00
|
CL2
|
A:O21804
|
0.0
|
32.6
|
1.0
|
C30
|
A:O21804
|
1.6
|
26.8
|
1.0
|
C2
|
A:O21804
|
2.6
|
27.0
|
1.0
|
C7
|
A:O21804
|
2.6
|
25.3
|
1.0
|
O1
|
A:O21804
|
2.7
|
27.8
|
1.0
|
N1
|
A:O21804
|
2.8
|
25.2
|
1.0
|
CB
|
A:ALA640
|
3.2
|
23.2
|
1.0
|
C8
|
A:O21804
|
3.5
|
27.2
|
1.0
|
CA
|
A:ALA640
|
3.7
|
22.9
|
1.0
|
CG2
|
A:ILE545
|
3.8
|
19.9
|
1.0
|
N
|
A:ASP641
|
3.9
|
24.6
|
1.0
|
C3
|
A:O21804
|
3.9
|
25.7
|
1.0
|
C6
|
A:O21804
|
3.9
|
25.9
|
1.0
|
O3
|
A:O21804
|
4.0
|
31.5
|
1.0
|
CG1
|
A:ILE545
|
4.0
|
20.5
|
1.0
|
CB
|
A:ILE545
|
4.1
|
19.3
|
1.0
|
N8
|
A:O21804
|
4.1
|
26.1
|
1.0
|
CD1
|
A:LEU630
|
4.1
|
28.3
|
1.0
|
C1
|
A:O21804
|
4.1
|
28.6
|
1.0
|
C
|
A:ALA640
|
4.3
|
24.1
|
1.0
|
C4
|
A:O21804
|
4.4
|
25.8
|
1.0
|
N2
|
A:O21804
|
4.4
|
28.6
|
1.0
|
C17
|
A:O21804
|
4.6
|
27.7
|
1.0
|
CA
|
A:ASP641
|
4.8
|
27.3
|
1.0
|
OD2
|
A:ASP641
|
4.8
|
47.5
|
1.0
|
CD1
|
A:ILE545
|
4.9
|
20.3
|
1.0
|
C29
|
A:O21804
|
4.9
|
24.9
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6p69
Go back to
Chlorine Binding Sites List in 6p69
Chlorine binding site 2 out
of 4 in the Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl804
b:24.8
occ:1.00
|
CL1
|
A:O21804
|
0.0
|
24.8
|
1.0
|
C6
|
A:O21804
|
1.8
|
25.9
|
1.0
|
C4
|
A:O21804
|
2.7
|
25.8
|
1.0
|
C7
|
A:O21804
|
2.8
|
25.3
|
1.0
|
O2
|
A:O21804
|
2.8
|
23.1
|
1.0
|
N1
|
A:O21804
|
3.1
|
25.2
|
1.0
|
O3
|
A:O21804
|
3.5
|
31.5
|
1.0
|
C8
|
A:O21804
|
3.6
|
27.2
|
1.0
|
CB
|
A:LYS514
|
3.7
|
30.0
|
1.0
|
CG2
|
A:VAL492
|
3.7
|
32.5
|
1.0
|
N
|
A:LYS514
|
3.8
|
28.0
|
1.0
|
CG2
|
A:VAL561
|
3.8
|
20.9
|
1.0
|
CG1
|
A:VAL492
|
3.9
|
32.5
|
1.0
|
C
|
A:VAL513
|
4.0
|
29.0
|
1.0
|
C30
|
A:O21804
|
4.0
|
26.8
|
1.0
|
C3
|
A:O21804
|
4.1
|
25.7
|
1.0
|
CA
|
A:LYS514
|
4.1
|
27.8
|
1.0
|
O
|
A:ALA512
|
4.3
|
23.9
|
1.0
|
C5
|
A:O21804
|
4.3
|
23.7
|
1.0
|
CB
|
A:ALA512
|
4.3
|
23.0
|
1.0
|
C
|
A:ALA512
|
4.3
|
22.6
|
1.0
|
N
|
A:VAL513
|
4.3
|
27.1
|
1.0
|
O
|
A:VAL513
|
4.4
|
28.6
|
1.0
|
CB
|
A:VAL492
|
4.5
|
31.0
|
1.0
|
CE
|
A:LYS514
|
4.5
|
37.5
|
1.0
|
CA
|
A:VAL513
|
4.5
|
27.6
|
1.0
|
N2
|
A:O21804
|
4.5
|
28.6
|
1.0
|
C2
|
A:O21804
|
4.5
|
27.0
|
1.0
|
CG1
|
A:VAL561
|
4.6
|
22.7
|
1.0
|
CG
|
A:LYS514
|
4.6
|
31.9
|
1.0
|
O
|
A:VAL559
|
4.8
|
22.0
|
1.0
|
CB
|
A:VAL561
|
4.8
|
22.3
|
1.0
|
CA
|
A:ALA512
|
5.0
|
21.1
|
1.0
|
N8
|
A:O21804
|
5.0
|
26.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6p69
Go back to
Chlorine Binding Sites List in 6p69
Chlorine binding site 3 out
of 4 in the Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl804
b:27.6
occ:1.00
|
CL2
|
B:O21804
|
0.0
|
27.6
|
1.0
|
C30
|
B:O21804
|
1.7
|
26.0
|
1.0
|
C2
|
B:O21804
|
2.6
|
24.3
|
1.0
|
C7
|
B:O21804
|
2.7
|
25.5
|
1.0
|
O1
|
B:O21804
|
2.8
|
23.1
|
1.0
|
N1
|
B:O21804
|
2.9
|
23.7
|
1.0
|
CB
|
B:ALA640
|
3.2
|
22.3
|
1.0
|
CA
|
B:ALA640
|
3.5
|
22.1
|
1.0
|
C8
|
B:O21804
|
3.6
|
28.7
|
1.0
|
N
|
B:ASP641
|
3.7
|
23.5
|
1.0
|
CG1
|
B:ILE545
|
3.9
|
19.1
|
1.0
|
CG2
|
B:ILE545
|
3.9
|
19.7
|
1.0
|
C3
|
B:O21804
|
3.9
|
23.5
|
1.0
|
CB
|
B:ILE545
|
4.0
|
19.5
|
1.0
|
C6
|
B:O21804
|
4.0
|
24.2
|
1.0
|
O3
|
B:O21804
|
4.0
|
29.3
|
1.0
|
CD1
|
B:LEU630
|
4.1
|
25.7
|
1.0
|
N8
|
B:O21804
|
4.1
|
24.5
|
1.0
|
C
|
B:ALA640
|
4.1
|
22.4
|
1.0
|
C1
|
B:O21804
|
4.1
|
21.1
|
1.0
|
N2
|
B:O21804
|
4.4
|
29.1
|
1.0
|
C4
|
B:O21804
|
4.4
|
23.0
|
1.0
|
C17
|
B:O21804
|
4.6
|
27.8
|
1.0
|
CA
|
B:ASP641
|
4.6
|
25.6
|
1.0
|
O
|
B:HOH909
|
4.6
|
35.9
|
1.0
|
C29
|
B:O21804
|
4.8
|
24.4
|
1.0
|
N
|
B:ALA640
|
4.8
|
20.5
|
1.0
|
CD1
|
B:ILE545
|
4.9
|
19.2
|
1.0
|
CB
|
B:ASP641
|
5.0
|
30.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6p69
Go back to
Chlorine Binding Sites List in 6p69
Chlorine binding site 4 out
of 4 in the Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of FGFR1-Y563C (FGFR4 Surrogate) Covalently Bound to Compound 11. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl804
b:26.3
occ:1.00
|
CL1
|
B:O21804
|
0.0
|
26.3
|
1.0
|
C6
|
B:O21804
|
1.7
|
24.2
|
1.0
|
C4
|
B:O21804
|
2.7
|
23.0
|
1.0
|
C7
|
B:O21804
|
2.7
|
25.5
|
1.0
|
O2
|
B:O21804
|
2.8
|
22.9
|
1.0
|
N1
|
B:O21804
|
3.0
|
23.7
|
1.0
|
C8
|
B:O21804
|
3.5
|
28.7
|
1.0
|
O3
|
B:O21804
|
3.6
|
29.3
|
1.0
|
CB
|
B:LYS514
|
3.6
|
20.2
|
1.0
|
N
|
B:LYS514
|
3.7
|
20.4
|
1.0
|
CG2
|
B:VAL561
|
3.8
|
21.3
|
1.0
|
CG1
|
B:VAL492
|
3.9
|
26.6
|
1.0
|
C3
|
B:O21804
|
4.0
|
23.5
|
1.0
|
CG2
|
B:VAL492
|
4.0
|
24.5
|
1.0
|
C30
|
B:O21804
|
4.0
|
26.0
|
1.0
|
C
|
B:VAL513
|
4.1
|
20.8
|
1.0
|
CA
|
B:LYS514
|
4.1
|
23.2
|
1.0
|
C5
|
B:O21804
|
4.2
|
20.0
|
1.0
|
CB
|
B:ALA512
|
4.2
|
24.5
|
1.0
|
C
|
B:ALA512
|
4.3
|
23.5
|
1.0
|
O
|
B:ALA512
|
4.3
|
22.6
|
1.0
|
O
|
B:HOH909
|
4.3
|
35.9
|
1.0
|
N
|
B:VAL513
|
4.3
|
22.7
|
1.0
|
CD
|
B:LYS514
|
4.4
|
23.5
|
1.0
|
C2
|
B:O21804
|
4.5
|
24.3
|
1.0
|
CG1
|
B:VAL561
|
4.5
|
22.7
|
1.0
|
N2
|
B:O21804
|
4.5
|
29.1
|
1.0
|
CG
|
B:LYS514
|
4.5
|
22.0
|
1.0
|
CB
|
B:VAL492
|
4.6
|
24.9
|
1.0
|
CA
|
B:VAL513
|
4.6
|
21.4
|
1.0
|
O
|
B:VAL513
|
4.6
|
21.3
|
1.0
|
O
|
B:VAL559
|
4.6
|
21.3
|
1.0
|
CB
|
B:VAL561
|
4.8
|
22.0
|
1.0
|
CA
|
B:ALA512
|
4.9
|
23.1
|
1.0
|
N8
|
B:O21804
|
4.9
|
24.5
|
1.0
|
|
Reference:
S.Prajapati,
N.A.Larsen.
N/A N/A.
Page generated: Mon Jul 29 13:09:24 2024
|