Atomistry » Chlorine » PDB 6p8z-6phi » 6pbj
Atomistry »
  Chlorine »
    PDB 6p8z-6phi »
      6pbj »

Chlorine in PDB 6pbj: The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation

Enzymatic activity of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation

All present enzymatic activity of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation:
2.5.1.54;

Protein crystallography data

The structure of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation, PDB code: 6pbj was solved by W.Jiao, Y.Fan, N.J.Blackmore, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.83 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 204.251, 204.251, 66.551, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 18

Other elements in 6pbj:

The structure of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation (pdb code 6pbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation, PDB code: 6pbj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 1 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:54.4
occ:1.00
 CB A:HIS341 3.3 46.0 1.0
NH2 A:ARG386 3.3 53.9 1.0
N A:HIS341 3.4 41.9 1.0
CD2 A:HIS341 3.5 55.5 1.0
CA A:GLY339 3.7 27.8 1.0
CG A:HIS341 3.7 50.3 1.0
C A:GLY339 3.7 27.8 1.0
N A:ASN340 3.8 32.2 1.0
CA A:HIS341 3.8 40.8 1.0
CE A:LYS342 3.9 50.2 1.0
CG A:LYS342 4.2 43.2 1.0
OD1 A:ASN340 4.2 29.7 1.0
N A:LYS342 4.2 35.1 1.0
O A:GLY339 4.3 25.7 1.0
C A:HIS341 4.4 36.8 1.0
C A:ASN340 4.5 39.1 1.0
OD1 A:ASN371 4.5 40.8 1.0
O A:GLY370 4.5 44.0 1.0
CZ A:ARG386 4.5 60.8 1.0
CD A:LYS342 4.6 48.2 1.0
O A:MET338 4.7 32.8 1.0
CA A:ASN340 4.7 30.7 1.0
NE2 A:HIS341 4.8 57.5 1.0
CB A:LYS342 4.9 43.3 1.0
N A:GLY339 4.9 31.4 1.0

Chlorine binding site 2 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 2 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:61.4
occ:1.00
 NE2 A:HIS326 3.2 43.9 1.0
CE1 A:HIS326 3.9 43.4 1.0
NH2 A:ARG25 3.9 33.3 1.0
CD2 A:HIS326 4.3 39.3 1.0
CZ A:ARG25 4.7 36.5 1.0
O A:HOH729 4.8 31.2 1.0
NH1 A:ARG25 4.8 40.6 1.0

Chlorine binding site 3 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 3 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:38.6
occ:1.00
 NH1 A:ARG171 3.2 16.0 1.0
CG B:PRO8 3.7 33.7 1.0
NH2 A:ARG171 3.8 16.0 1.0
NH2 A:ARG168 3.9 17.4 1.0
O A:HOH795 3.9 27.0 1.0
O A:HOH693 3.9 19.1 1.0
O A:HOH646 4.0 13.4 1.0
CD B:PRO8 4.0 28.1 1.0
CZ A:ARG171 4.0 15.8 1.0
NH1 A:ARG168 4.4 13.3 1.0
CZ A:ARG168 4.6 14.9 1.0
O A:HOH824 5.0 41.2 1.0

Chlorine binding site 4 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 4 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:55.7
occ:1.00
 O B:HOH712 3.6 28.6 1.0
NH1 B:ARG49 3.6 18.1 1.0
NH1 B:ARG256 3.7 23.6 1.0
NH2 B:ARG256 3.9 20.6 1.0
CZ B:ARG256 4.3 20.6 1.0
CZ B:ARG49 4.5 17.5 1.0
NH2 B:ARG49 4.6 17.1 1.0

Chlorine binding site 5 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 5 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl507

b:58.8
occ:1.00
 NE2 B:HIS326 3.6 37.3 1.0
O B:HOH834 3.7 18.4 1.0
NH2 B:ARG25 3.8 18.8 1.0
NH1 B:ARG25 4.0 17.6 1.0
O B:HOH868 4.1 28.9 1.0
CZ B:ARG25 4.3 13.2 1.0
O B:HOH713 4.3 25.7 1.0
CD2 B:HIS326 4.5 37.9 1.0
CE1 B:HIS326 4.6 41.0 1.0

Chlorine binding site 6 out of 6 in 6pbj

Go back to Chlorine Binding Sites List in 6pbj
Chlorine binding site 6 out of 6 in the The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with GLY190PRO Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl508

b:49.7
occ:1.00
 O B:HOH855 3.2 47.5 1.0
NH2 B:ARG386 3.3 58.8 1.0
N B:HIS341 3.4 33.2 1.0
CB B:HIS341 3.4 44.3 1.0
ND1 B:HIS341 3.5 54.3 1.0
CA B:GLY339 3.6 23.8 1.0
C B:GLY339 3.7 23.8 1.0
N B:ASN340 3.7 27.2 1.0
CG B:HIS341 3.8 41.5 1.0
CA B:HIS341 3.9 33.7 1.0
CE B:LYS342 4.2 53.8 1.0
OD1 B:ASN340 4.2 22.6 1.0
O B:GLY339 4.3 21.9 1.0
OD1 B:ASN371 4.4 39.0 1.0
O B:GLY370 4.4 42.4 1.0
N B:LYS342 4.4 28.1 1.0
CG B:LYS342 4.4 35.0 1.0
NZ B:LYS342 4.4 60.0 1.0
C B:ASN340 4.5 24.9 1.0
C B:HIS341 4.5 30.8 1.0
CE1 B:HIS341 4.6 51.1 1.0
CZ B:ARG386 4.6 62.6 1.0
O B:MET338 4.6 20.6 1.0
CA B:ASN340 4.7 27.7 1.0
CD B:LYS342 4.8 46.5 1.0
N B:GLY339 4.9 21.4 1.0
CD2 B:HIS341 4.9 48.6 1.0

Reference:

W.Jiao, Y.Fan, N.J.Blackmore, E.J.Parker. Single Amino Acid Substitution Severs Dynamic Communication Pathway To Be Published.
Page generated: Mon Jul 29 13:17:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy