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Chlorine in PDB 6pj3: Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex

Enzymatic activity of Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex

All present enzymatic activity of Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex:
3.6.1.54;

Protein crystallography data

The structure of Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex, PDB code: 6pj3 was solved by J.Cho, P.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.81 / 2.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.800, 105.800, 53.440, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 21.5

Other elements in 6pj3:

The structure of Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex (pdb code 6pj3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex, PDB code: 6pj3:

Chlorine binding site 1 out of 1 in 6pj3

Go back to Chlorine Binding Sites List in 6pj3
Chlorine binding site 1 out of 1 in the Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Klebsiella Pneumoniae Lpxh/Jh-Lph-33 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:46.2
occ:1.00
 CL28 A:OKY303 0.0 46.2 1.0
C27 A:OKY303 1.8 38.3 1.0
C01 A:OKY303 2.8 39.4 1.0
C26 A:OKY303 2.8 39.1 1.0
CA A:GLN138 3.5 36.3 1.0
O A:VAL132 3.6 43.2 1.0
O A:ILE137 3.6 39.6 1.0
CG A:GLN138 3.7 40.3 1.0
N A:GLN138 3.8 38.9 1.0
C A:ILE137 3.8 41.3 1.0
CG2 A:ILE137 3.9 32.1 1.0
CB A:PHE141 3.9 33.7 1.0
C02 A:OKY303 4.0 37.2 1.0
CA A:VAL132 4.1 36.4 1.0
C25 A:OKY303 4.1 44.8 1.0
CB A:GLN138 4.1 36.2 1.0
C A:VAL132 4.2 32.1 1.0
CE2 A:PHE82 4.3 30.1 1.0
CB A:VAL132 4.3 43.9 1.0
CG A:PHE141 4.4 35.2 1.0
CD2 A:LEU83 4.5 26.9 1.0
C24 A:OKY303 4.6 35.5 1.0
CG1 A:VAL132 4.6 40.1 1.0
C A:GLN138 4.7 40.0 1.0
CB A:ILE137 4.7 38.1 1.0
CD2 A:PHE141 4.7 34.2 1.0
O A:GLN138 4.8 34.5 1.0
CD A:GLN138 4.8 39.3 1.0
CA A:ILE137 4.9 37.2 1.0
CZ A:PHE82 4.9 36.8 1.0

Reference:

J.Cho, M.Lee, C.Cochrane, C.Webster, B.Fenton, J.Zhao, J.Hong, P.Zhao. Structural Basis of the Udp-Diacylglucosamine Pyrophosphohydrolase Lpxh Inhibition By Sulfonyl Piperazine Antibiotics Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1912876117
Page generated: Mon Jul 29 13:23:07 2024

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