Chlorine in PDB 6pz0: Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
Enzymatic activity of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
All present enzymatic activity of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine:
1.21.1.1;
Protein crystallography data
The structure of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine, PDB code: 6pz0
was solved by
Z.Sun,
J.M.Kavran,
S.E.Rokita,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
35.67 /
1.80
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.886,
81.815,
103.75,
90,
90,
90
|
|
R / Rfree (%)
|
14.9 /
19.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
(pdb code 6pz0). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine, PDB code: 6pz0:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 1 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:15.6
occ:1.00
|
HG1
|
A:THR13
|
2.1
|
18.7
|
1.0
|
|
HH12
|
A:ARG11
|
2.3
|
16.1
|
1.0
|
|
H1'2
|
A:FMN301
|
2.7
|
12.5
|
1.0
|
|
HH22
|
A:ARG11
|
2.7
|
16.7
|
1.0
|
|
HD2
|
A:PRO137
|
2.8
|
19.0
|
1.0
|
|
HG23
|
A:THR13
|
2.8
|
20.6
|
1.0
|
|
HD3
|
A:PRO137
|
2.8
|
19.0
|
1.0
|
|
OG1
|
A:THR13
|
2.9
|
15.6
|
1.0
|
|
HB3
|
B:PRO38
|
2.9
|
16.5
|
1.0
|
|
O3'
|
A:FMN301
|
3.1
|
12.3
|
1.0
|
|
NH1
|
A:ARG11
|
3.1
|
13.4
|
1.0
|
|
HA
|
A:THR13
|
3.1
|
14.3
|
1.0
|
|
H3'
|
A:FMN301
|
3.1
|
14.5
|
1.0
|
|
CD
|
A:PRO137
|
3.3
|
15.8
|
1.0
|
|
HA
|
A:VAL136
|
3.4
|
19.9
|
1.0
|
|
HB2
|
B:PRO38
|
3.4
|
16.5
|
1.0
|
|
NH2
|
A:ARG11
|
3.4
|
13.9
|
1.0
|
|
CB
|
A:THR13
|
3.5
|
14.6
|
1.0
|
|
C1'
|
A:FMN301
|
3.5
|
10.4
|
1.0
|
|
CG2
|
A:THR13
|
3.6
|
17.1
|
1.0
|
|
H1'1
|
A:FMN301
|
3.6
|
12.5
|
1.0
|
|
CB
|
B:PRO38
|
3.6
|
13.7
|
1.0
|
|
C3'
|
A:FMN301
|
3.6
|
12.1
|
1.0
|
|
HG23
|
A:VAL136
|
3.6
|
20.3
|
1.0
|
|
CA
|
A:THR13
|
3.7
|
11.9
|
1.0
|
|
HH11
|
A:ARG11
|
3.7
|
16.1
|
1.0
|
|
CZ
|
A:ARG11
|
3.7
|
11.4
|
1.0
|
|
HO3'
|
A:FMN301
|
3.8
|
14.8
|
1.0
|
|
H9
|
A:FMN301
|
3.9
|
13.7
|
1.0
|
|
HG3
|
B:PRO38
|
3.9
|
17.5
|
1.0
|
|
HG21
|
A:THR13
|
3.9
|
20.6
|
1.0
|
|
HG2
|
A:PRO137
|
4.0
|
20.4
|
1.0
|
|
N
|
A:THR13
|
4.0
|
14.0
|
1.0
|
|
H
|
A:THR13
|
4.1
|
16.8
|
1.0
|
|
CG
|
A:PRO137
|
4.2
|
17.0
|
1.0
|
|
HH21
|
A:ARG11
|
4.2
|
16.7
|
1.0
|
|
C2'
|
A:FMN301
|
4.2
|
12.2
|
1.0
|
|
CA
|
A:VAL136
|
4.3
|
16.5
|
1.0
|
|
HG22
|
A:THR13
|
4.3
|
20.6
|
1.0
|
|
CG
|
B:PRO38
|
4.3
|
14.6
|
1.0
|
|
O5'
|
A:FMN301
|
4.5
|
12.8
|
1.0
|
|
N
|
A:PRO137
|
4.5
|
13.5
|
1.0
|
|
HB
|
A:THR13
|
4.5
|
17.5
|
1.0
|
|
CG2
|
A:VAL136
|
4.5
|
16.9
|
1.0
|
|
O
|
A:SER135
|
4.5
|
12.8
|
1.0
|
|
HB
|
A:VAL136
|
4.6
|
18.7
|
1.0
|
|
HG3
|
A:PRO137
|
4.6
|
20.4
|
1.0
|
|
N10
|
A:FMN301
|
4.7
|
13.9
|
1.0
|
|
CB
|
A:VAL136
|
4.7
|
15.6
|
1.0
|
|
C
|
A:LYS12
|
4.8
|
13.7
|
1.0
|
|
H5'1
|
A:FMN301
|
4.8
|
14.1
|
1.0
|
|
O2P
|
A:FMN301
|
4.8
|
15.6
|
1.0
|
|
H2'
|
A:FMN301
|
4.8
|
14.6
|
1.0
|
|
HD13
|
A:LEU125
|
4.8
|
15.2
|
1.0
|
|
C9
|
A:FMN301
|
4.8
|
11.4
|
1.0
|
|
HA
|
B:PRO38
|
4.9
|
13.9
|
1.0
|
|
CA
|
B:PRO38
|
4.9
|
11.6
|
1.0
|
|
C4'
|
A:FMN301
|
4.9
|
12.1
|
1.0
|
|
O
|
A:HOH443
|
4.9
|
13.2
|
1.0
|
|
H
|
A:VAL14
|
4.9
|
16.8
|
1.0
|
|
HG2
|
B:PRO38
|
4.9
|
17.5
|
1.0
|
|
HG22
|
A:VAL136
|
4.9
|
20.3
|
1.0
|
|
C
|
A:VAL136
|
5.0
|
11.6
|
1.0
|
|
C5'
|
A:FMN301
|
5.0
|
11.8
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 2 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:21.4
occ:1.00
|
HH11
|
A:ARG157
|
2.7
|
28.5
|
1.0
|
|
HG2
|
A:LYS108
|
3.1
|
19.7
|
1.0
|
|
O
|
A:HOH468
|
3.1
|
15.8
|
1.0
|
|
HD2
|
A:ARG114
|
3.1
|
21.9
|
1.0
|
|
O
|
A:HOH537
|
3.2
|
27.2
|
1.0
|
|
HD2
|
A:ARG157
|
3.2
|
18.1
|
1.0
|
|
O
|
A:HOH559
|
3.2
|
41.0
|
1.0
|
|
HD3
|
A:ARG157
|
3.3
|
18.1
|
1.0
|
|
NH1
|
A:ARG157
|
3.5
|
23.8
|
1.0
|
|
CD
|
A:ARG157
|
3.7
|
15.1
|
1.0
|
|
HA
|
A:LYS108
|
3.7
|
17.2
|
1.0
|
|
HH12
|
A:ARG157
|
3.8
|
28.5
|
1.0
|
|
HB3
|
A:LYS108
|
3.9
|
18.3
|
1.0
|
|
HG3
|
A:ARG114
|
3.9
|
23.8
|
1.0
|
|
CG
|
A:LYS108
|
4.0
|
16.4
|
1.0
|
|
CD
|
A:ARG114
|
4.0
|
18.3
|
1.0
|
|
HG2
|
A:ARG114
|
4.0
|
23.8
|
1.0
|
|
HB2
|
A:ARG157
|
4.2
|
15.8
|
1.0
|
|
CG
|
A:ARG114
|
4.2
|
19.8
|
1.0
|
|
CB
|
A:LYS108
|
4.3
|
15.2
|
1.0
|
|
HG
|
A:SER113
|
4.4
|
18.1
|
1.0
|
|
CA
|
A:LYS108
|
4.4
|
14.3
|
1.0
|
|
HB3
|
A:ARG157
|
4.4
|
15.8
|
1.0
|
|
CZ
|
A:ARG157
|
4.5
|
25.9
|
1.0
|
|
HD3
|
A:LYS108
|
4.5
|
28.7
|
1.0
|
|
NE
|
A:ARG157
|
4.5
|
17.5
|
1.0
|
|
HE2
|
A:LYS108
|
4.6
|
25.6
|
1.0
|
|
HD3
|
A:ARG114
|
4.6
|
21.9
|
1.0
|
|
HG3
|
A:LYS108
|
4.6
|
19.7
|
1.0
|
|
O
|
A:HOH405
|
4.6
|
32.0
|
1.0
|
|
CB
|
A:ARG157
|
4.7
|
13.1
|
1.0
|
|
HG
|
A:SER106
|
4.7
|
19.5
|
1.0
|
|
CD
|
A:LYS108
|
4.7
|
23.9
|
1.0
|
|
CG
|
A:ARG157
|
4.8
|
16.4
|
1.0
|
|
OG
|
A:SER113
|
4.9
|
15.1
|
1.0
|
|
O
|
A:LYS108
|
4.9
|
19.0
|
1.0
|
|
NE
|
A:ARG114
|
4.9
|
19.4
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 3 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:20.3
occ:1.00
|
H
|
A:ARG15
|
2.4
|
16.4
|
1.0
|
|
H
|
A:LYS171
|
2.6
|
28.6
|
1.0
|
|
HA
|
A:PRO170
|
2.8
|
27.0
|
1.0
|
|
HG3
|
A:ARG16
|
3.0
|
23.7
|
1.0
|
|
HB2
|
A:ARG15
|
3.0
|
18.6
|
1.0
|
|
O
|
A:HOH454
|
3.1
|
25.9
|
1.0
|
|
H
|
A:ARG16
|
3.1
|
16.9
|
1.0
|
|
O
|
A:HOH587
|
3.1
|
29.7
|
1.0
|
|
HG2
|
A:LYS171
|
3.2
|
42.2
|
1.0
|
|
N
|
A:ARG15
|
3.2
|
13.7
|
1.0
|
|
HB3
|
A:PRO170
|
3.3
|
21.3
|
1.0
|
|
N
|
A:LYS171
|
3.4
|
23.8
|
1.0
|
|
CA
|
A:PRO170
|
3.5
|
22.5
|
1.0
|
|
HD3
|
A:ARG16
|
3.5
|
28.7
|
1.0
|
|
HA
|
A:VAL14
|
3.6
|
14.9
|
1.0
|
|
N
|
A:ARG16
|
3.6
|
14.1
|
1.0
|
|
HB2
|
A:ARG16
|
3.6
|
21.9
|
1.0
|
|
HB2
|
A:PRO170
|
3.7
|
21.3
|
1.0
|
|
CB
|
A:PRO170
|
3.7
|
17.8
|
1.0
|
|
CG
|
A:ARG16
|
3.8
|
19.7
|
1.0
|
|
CB
|
A:ARG15
|
3.8
|
15.5
|
1.0
|
|
CA
|
A:ARG15
|
3.8
|
13.2
|
1.0
|
|
C
|
A:PRO170
|
4.0
|
22.6
|
1.0
|
|
C
|
A:ARG15
|
4.0
|
16.0
|
1.0
|
|
HG3
|
A:ARG15
|
4.1
|
20.9
|
1.0
|
|
CD
|
A:ARG16
|
4.1
|
23.9
|
1.0
|
|
CB
|
A:ARG16
|
4.1
|
18.2
|
1.0
|
|
CG
|
A:LYS171
|
4.1
|
35.1
|
1.0
|
|
HB3
|
A:LYS171
|
4.2
|
30.1
|
1.0
|
|
C
|
A:VAL14
|
4.3
|
12.1
|
1.0
|
|
CA
|
A:VAL14
|
4.3
|
12.5
|
1.0
|
|
O
|
A:HOH420
|
4.4
|
20.3
|
1.0
|
|
HD2
|
A:ARG16
|
4.4
|
28.7
|
1.0
|
|
HE2
|
A:LYS171
|
4.4
|
68.0
|
1.0
|
|
O
|
A:THR13
|
4.5
|
15.1
|
1.0
|
|
CA
|
A:ARG16
|
4.5
|
17.6
|
1.0
|
|
CB
|
A:LYS171
|
4.5
|
25.1
|
1.0
|
|
CA
|
A:LYS171
|
4.5
|
23.8
|
1.0
|
|
CG
|
A:ARG15
|
4.5
|
17.5
|
1.0
|
|
HB3
|
A:ARG15
|
4.5
|
18.6
|
1.0
|
|
HH11
|
A:ARG15
|
4.6
|
21.1
|
1.0
|
|
HG13
|
A:VAL14
|
4.6
|
18.7
|
1.0
|
|
HG2
|
A:ARG16
|
4.6
|
23.7
|
1.0
|
|
HG3
|
A:LYS171
|
4.6
|
42.2
|
1.0
|
|
HD2
|
A:ARG15
|
4.7
|
19.4
|
1.0
|
|
HA
|
A:ARG15
|
4.8
|
15.8
|
1.0
|
|
N
|
A:PRO170
|
4.8
|
20.8
|
1.0
|
|
O
|
A:ARG15
|
4.9
|
16.4
|
1.0
|
|
O
|
A:HOH581
|
5.0
|
39.2
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 4 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl306
b:20.8
occ:1.00
|
HE1
|
A:TRP82
|
2.4
|
23.2
|
1.0
|
|
HD22
|
B:ASN42
|
2.4
|
20.6
|
1.0
|
|
HZ3
|
A:LYS86
|
2.8
|
40.5
|
1.0
|
|
HB3
|
B:ASN42
|
3.0
|
14.8
|
1.0
|
|
HE2
|
A:LYS86
|
3.1
|
31.1
|
1.0
|
|
HZ2
|
A:LYS86
|
3.1
|
40.5
|
1.0
|
|
NE1
|
A:TRP82
|
3.2
|
19.4
|
1.0
|
|
ND2
|
B:ASN42
|
3.2
|
17.2
|
1.0
|
|
NZ
|
A:LYS86
|
3.3
|
33.7
|
1.0
|
|
HB3
|
A:TYR174
|
3.4
|
17.4
|
1.0
|
|
HD2
|
A:PRO175
|
3.5
|
21.8
|
1.0
|
|
CE
|
A:LYS86
|
3.7
|
25.9
|
1.0
|
|
HD21
|
B:ASN42
|
3.8
|
20.6
|
1.0
|
|
CB
|
B:ASN42
|
3.8
|
12.3
|
1.0
|
|
HD2
|
A:TYR174
|
3.9
|
22.8
|
1.0
|
|
CG
|
B:ASN42
|
4.0
|
11.9
|
1.0
|
|
HD1
|
A:TRP82
|
4.0
|
20.6
|
1.0
|
|
HB2
|
B:ASN42
|
4.0
|
14.8
|
1.0
|
|
CD1
|
A:TRP82
|
4.1
|
17.2
|
1.0
|
|
HZ2
|
A:TRP82
|
4.1
|
20.4
|
1.0
|
|
HZ1
|
A:LYS86
|
4.1
|
40.5
|
1.0
|
|
HE3
|
A:LYS86
|
4.2
|
31.1
|
1.0
|
|
CB
|
A:TYR174
|
4.2
|
14.5
|
1.0
|
|
O
|
B:HOH423
|
4.2
|
24.7
|
1.0
|
|
CE2
|
A:TRP82
|
4.2
|
18.6
|
1.0
|
|
CD2
|
A:TYR174
|
4.2
|
19.0
|
1.0
|
|
CG
|
A:TYR174
|
4.4
|
17.6
|
1.0
|
|
CD
|
A:PRO175
|
4.4
|
18.2
|
1.0
|
|
HB2
|
A:TYR174
|
4.5
|
17.4
|
1.0
|
|
CZ2
|
A:TRP82
|
4.6
|
17.0
|
1.0
|
|
O
|
A:HOH548
|
4.7
|
26.2
|
1.0
|
|
O
|
B:MET41
|
4.7
|
14.1
|
1.0
|
|
HD3
|
A:PRO175
|
4.7
|
21.8
|
1.0
|
|
O
|
B:ASN42
|
4.8
|
13.8
|
1.0
|
|
HD2
|
A:LYS86
|
4.9
|
31.1
|
1.0
|
|
HG2
|
A:PRO175
|
4.9
|
22.9
|
1.0
|
|
CD
|
A:LYS86
|
4.9
|
25.9
|
1.0
|
|
O
|
A:HOH579
|
4.9
|
40.8
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 5 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:15.8
occ:1.00
|
HG1
|
B:THR13
|
2.1
|
19.3
|
1.0
|
|
HH12
|
B:ARG11
|
2.2
|
15.4
|
1.0
|
|
HD3
|
B:PRO137
|
2.6
|
18.7
|
1.0
|
|
HH22
|
B:ARG11
|
2.7
|
15.8
|
1.0
|
|
HG23
|
B:THR13
|
2.7
|
18.1
|
1.0
|
|
H1'2
|
B:FMN301
|
2.7
|
15.9
|
1.0
|
|
HB3
|
A:PRO38
|
2.9
|
13.6
|
1.0
|
|
OG1
|
B:THR13
|
2.9
|
16.1
|
1.0
|
|
O3'
|
B:FMN301
|
3.0
|
12.4
|
1.0
|
|
HD2
|
B:PRO137
|
3.0
|
18.7
|
1.0
|
|
NH1
|
B:ARG11
|
3.0
|
12.9
|
1.0
|
|
H3'
|
B:FMN301
|
3.1
|
15.3
|
1.0
|
|
HA
|
B:THR13
|
3.2
|
14.4
|
1.0
|
|
CD
|
B:PRO137
|
3.2
|
15.6
|
1.0
|
|
HB2
|
A:PRO38
|
3.3
|
13.6
|
1.0
|
|
NH2
|
B:ARG11
|
3.4
|
13.2
|
1.0
|
|
CG2
|
B:THR13
|
3.5
|
15.1
|
1.0
|
|
CB
|
B:THR13
|
3.5
|
16.8
|
1.0
|
|
CB
|
A:PRO38
|
3.5
|
11.3
|
1.0
|
|
H1'1
|
B:FMN301
|
3.5
|
15.9
|
1.0
|
|
C3'
|
B:FMN301
|
3.6
|
12.7
|
1.0
|
|
C1'
|
B:FMN301
|
3.6
|
13.2
|
1.0
|
|
HA
|
B:VAL136
|
3.6
|
13.6
|
1.0
|
|
HO3'
|
B:FMN301
|
3.6
|
14.9
|
1.0
|
|
HH11
|
B:ARG11
|
3.7
|
15.4
|
1.0
|
|
CZ
|
B:ARG11
|
3.7
|
14.2
|
1.0
|
|
CA
|
B:THR13
|
3.7
|
12.0
|
1.0
|
|
HG2
|
B:PRO137
|
3.7
|
22.1
|
1.0
|
|
HG21
|
B:THR13
|
3.8
|
18.1
|
1.0
|
|
CG
|
B:PRO137
|
3.9
|
18.5
|
1.0
|
|
HG23
|
B:VAL136
|
4.0
|
20.0
|
1.0
|
|
H
|
B:THR13
|
4.0
|
15.4
|
1.0
|
|
N
|
B:THR13
|
4.0
|
12.8
|
1.0
|
|
H9
|
B:FMN301
|
4.0
|
12.4
|
1.0
|
|
HG3
|
A:PRO38
|
4.1
|
16.5
|
1.0
|
|
HH21
|
B:ARG11
|
4.1
|
15.8
|
1.0
|
|
HG3
|
B:PRO137
|
4.2
|
22.1
|
1.0
|
|
HG22
|
B:THR13
|
4.2
|
18.1
|
1.0
|
|
C2'
|
B:FMN301
|
4.2
|
12.8
|
1.0
|
|
O5'
|
B:FMN301
|
4.4
|
14.5
|
1.0
|
|
CG
|
A:PRO38
|
4.4
|
13.7
|
1.0
|
|
HB
|
B:THR13
|
4.4
|
20.1
|
1.0
|
|
N
|
B:PRO137
|
4.5
|
16.3
|
1.0
|
|
O
|
B:SER135
|
4.5
|
11.8
|
1.0
|
|
CA
|
B:VAL136
|
4.5
|
11.4
|
1.0
|
|
O3P
|
B:FMN301
|
4.6
|
15.0
|
1.0
|
|
HA
|
A:PRO38
|
4.7
|
13.8
|
1.0
|
|
H5'1
|
B:FMN301
|
4.7
|
13.1
|
1.0
|
|
C
|
B:LYS12
|
4.8
|
15.1
|
1.0
|
|
CA
|
A:PRO38
|
4.8
|
11.5
|
1.0
|
|
H2'
|
B:FMN301
|
4.8
|
15.4
|
1.0
|
|
N10
|
B:FMN301
|
4.8
|
13.8
|
1.0
|
|
C4'
|
B:FMN301
|
4.8
|
10.7
|
1.0
|
|
CG2
|
B:VAL136
|
4.9
|
16.7
|
1.0
|
|
O
|
B:HOH457
|
4.9
|
13.6
|
1.0
|
|
C9
|
B:FMN301
|
4.9
|
10.3
|
1.0
|
|
HD13
|
B:LEU125
|
4.9
|
16.8
|
1.0
|
|
C5'
|
B:FMN301
|
4.9
|
10.9
|
1.0
|
|
HB
|
B:VAL136
|
5.0
|
19.4
|
1.0
|
|
NE
|
B:ARG11
|
5.0
|
15.1
|
1.0
|
|
H
|
B:VAL14
|
5.0
|
16.8
|
1.0
|
|
P
|
B:FMN301
|
5.0
|
13.1
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 6pz0
Go back to
Chlorine Binding Sites List in 6pz0
Chlorine binding site 6 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:16.8
occ:1.00
|
HZ1
|
B:LYS86
|
2.4
|
36.9
|
1.0
|
|
HE1
|
B:TRP82
|
2.5
|
17.6
|
1.0
|
|
HD22
|
A:ASN42
|
2.5
|
18.1
|
1.0
|
|
HE3
|
B:LYS86
|
3.1
|
25.5
|
1.0
|
|
HB3
|
A:ASN42
|
3.2
|
12.2
|
1.0
|
|
NZ
|
B:LYS86
|
3.2
|
30.7
|
1.0
|
|
HB3
|
B:TYR174
|
3.3
|
14.8
|
1.0
|
|
HE2
|
B:LYS86
|
3.3
|
25.5
|
1.0
|
|
NE1
|
B:TRP82
|
3.4
|
14.7
|
1.0
|
|
ND2
|
A:ASN42
|
3.4
|
15.1
|
1.0
|
|
HD2
|
B:PRO175
|
3.4
|
23.9
|
1.0
|
|
CE
|
B:LYS86
|
3.4
|
21.3
|
1.0
|
|
HZ2
|
B:LYS86
|
3.7
|
36.9
|
1.0
|
|
HZ3
|
B:LYS86
|
3.8
|
36.9
|
1.0
|
|
HD21
|
A:ASN42
|
3.9
|
18.1
|
1.0
|
|
CB
|
A:ASN42
|
3.9
|
10.2
|
1.0
|
|
HZ2
|
B:TRP82
|
4.0
|
20.6
|
1.0
|
|
HD2
|
B:TYR174
|
4.0
|
18.5
|
1.0
|
|
CB
|
B:TYR174
|
4.1
|
12.3
|
1.0
|
|
HB2
|
A:ASN42
|
4.1
|
12.2
|
1.0
|
|
CG
|
A:ASN42
|
4.2
|
12.2
|
1.0
|
|
CD1
|
B:TRP82
|
4.3
|
23.3
|
1.0
|
|
CE2
|
B:TRP82
|
4.3
|
14.1
|
1.0
|
|
CD2
|
B:TYR174
|
4.3
|
15.4
|
1.0
|
|
HD1
|
B:TRP82
|
4.3
|
27.9
|
1.0
|
|
CG
|
B:TYR174
|
4.4
|
13.3
|
1.0
|
|
CD
|
B:PRO175
|
4.4
|
19.9
|
1.0
|
|
HB2
|
B:TYR174
|
4.4
|
14.8
|
1.0
|
|
CZ2
|
B:TRP82
|
4.5
|
17.2
|
1.0
|
|
HG2
|
B:PRO175
|
4.8
|
25.3
|
1.0
|
|
O
|
A:MET41
|
4.8
|
13.1
|
1.0
|
|
HD3
|
B:PRO175
|
4.8
|
23.9
|
1.0
|
|
OE2
|
B:GLU85
|
4.8
|
32.8
|
1.0
|
|
O
|
A:ASN42
|
4.9
|
13.3
|
1.0
|
|
CD
|
B:LYS86
|
4.9
|
21.6
|
1.0
|
|
O
|
A:HOH481
|
5.0
|
27.0
|
1.0
|
|
Reference:
Z.Sun,
J.M.Kavran,
S.E.Rokita.
Structure of Oxidized Form of Tn Iyd Bound to Fmn and L-Tyrosine To Be Published.
Page generated: Mon Jul 29 13:39:04 2024
|
