Chlorine in PDB 6q1l: Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
Enzymatic activity of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
All present enzymatic activity of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine:
1.21.1.1;
Protein crystallography data
The structure of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine, PDB code: 6q1l
was solved by
Z.Sun,
J.M.Kavran,
S.E.Rokita,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
37.91 /
1.60
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.861,
81.232,
103.9,
90,
90,
90
|
|
R / Rfree (%)
|
16.5 /
19.6
|
Other elements in 6q1l:
The structure of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
(pdb code 6q1l). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine, PDB code: 6q1l:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 1 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:16.1
occ:1.00
|
HG1
|
A:THR13
|
2.1
|
20.4
|
1.0
|
|
HH12
|
A:ARG11
|
2.2
|
16.5
|
1.0
|
|
HD3
|
A:PRO137
|
2.6
|
23.3
|
1.0
|
|
HH22
|
A:ARG11
|
2.7
|
15.9
|
1.0
|
|
H1'2
|
A:FMN301
|
2.7
|
13.1
|
1.0
|
|
HG23
|
A:THR13
|
2.8
|
20.5
|
1.0
|
|
HD2
|
A:PRO137
|
2.9
|
23.3
|
1.0
|
|
OG1
|
A:THR13
|
3.0
|
17.0
|
1.0
|
|
HB3
|
B:PRO38
|
3.0
|
17.0
|
1.0
|
|
O3'
|
A:FMN301
|
3.0
|
13.3
|
1.0
|
|
NH1
|
A:ARG11
|
3.1
|
13.8
|
1.0
|
|
HA
|
A:THR13
|
3.1
|
15.5
|
1.0
|
|
CD
|
A:PRO137
|
3.2
|
19.4
|
1.0
|
|
H3'
|
A:FMN301
|
3.2
|
14.8
|
1.0
|
|
HB2
|
B:PRO38
|
3.4
|
17.0
|
1.0
|
|
NH2
|
A:ARG11
|
3.4
|
13.3
|
1.0
|
|
HA
|
A:VAL136
|
3.4
|
18.5
|
1.0
|
|
CG2
|
A:THR13
|
3.5
|
17.1
|
1.0
|
|
CB
|
A:THR13
|
3.5
|
15.0
|
1.0
|
|
C1'
|
A:FMN301
|
3.6
|
10.9
|
1.0
|
|
CB
|
B:PRO38
|
3.6
|
14.1
|
1.0
|
|
H1'1
|
A:FMN301
|
3.6
|
13.1
|
1.0
|
|
C3'
|
A:FMN301
|
3.6
|
12.3
|
1.0
|
|
HO3'
|
A:FMN301
|
3.7
|
15.9
|
1.0
|
|
CA
|
A:THR13
|
3.7
|
12.9
|
1.0
|
|
CZ
|
A:ARG11
|
3.7
|
13.9
|
1.0
|
|
HH11
|
A:ARG11
|
3.7
|
16.5
|
1.0
|
|
HG23
|
A:VAL136
|
3.7
|
19.2
|
1.0
|
|
HG2
|
A:PRO137
|
3.9
|
20.1
|
1.0
|
|
HG21
|
A:THR13
|
3.9
|
20.5
|
1.0
|
|
HG3
|
B:PRO38
|
4.0
|
12.5
|
1.0
|
|
H9
|
A:FMN301
|
4.0
|
14.9
|
1.0
|
|
CG
|
A:PRO137
|
4.0
|
16.8
|
1.0
|
|
N
|
A:THR13
|
4.0
|
16.6
|
1.0
|
|
H
|
A:THR13
|
4.1
|
19.9
|
1.0
|
|
HH21
|
A:ARG11
|
4.2
|
15.9
|
1.0
|
|
HG22
|
A:THR13
|
4.3
|
20.5
|
1.0
|
|
C2'
|
A:FMN301
|
4.3
|
11.6
|
1.0
|
|
CG
|
B:PRO38
|
4.4
|
10.4
|
1.0
|
|
CA
|
A:VAL136
|
4.4
|
15.4
|
1.0
|
|
HG3
|
A:PRO137
|
4.4
|
20.1
|
1.0
|
|
N
|
A:PRO137
|
4.4
|
13.5
|
1.0
|
|
O5'
|
A:FMN301
|
4.5
|
12.7
|
1.0
|
|
HB
|
A:THR13
|
4.5
|
18.0
|
1.0
|
|
O
|
A:SER135
|
4.5
|
14.3
|
1.0
|
|
CG2
|
A:VAL136
|
4.6
|
16.0
|
1.0
|
|
H5'1
|
A:FMN301
|
4.7
|
15.2
|
1.0
|
|
N10
|
A:FMN301
|
4.7
|
14.8
|
1.0
|
|
HB
|
A:VAL136
|
4.8
|
16.9
|
1.0
|
|
HD13
|
A:LEU125
|
4.8
|
17.7
|
1.0
|
|
C
|
A:LYS12
|
4.8
|
18.2
|
1.0
|
|
O2P
|
A:FMN301
|
4.8
|
16.1
|
1.0
|
|
C9
|
A:FMN301
|
4.8
|
12.4
|
1.0
|
|
H2'
|
A:FMN301
|
4.9
|
13.9
|
1.0
|
|
CB
|
A:VAL136
|
4.9
|
14.1
|
1.0
|
|
HA
|
B:PRO38
|
4.9
|
16.3
|
1.0
|
|
C4'
|
A:FMN301
|
4.9
|
12.9
|
1.0
|
|
CA
|
B:PRO38
|
4.9
|
13.6
|
1.0
|
|
HG2
|
B:PRO38
|
4.9
|
12.5
|
1.0
|
|
C
|
A:VAL136
|
4.9
|
14.8
|
1.0
|
|
C5'
|
A:FMN301
|
5.0
|
12.7
|
1.0
|
|
H
|
A:VAL14
|
5.0
|
16.0
|
1.0
|
|
O
|
A:HOH433
|
5.0
|
14.5
|
1.0
|
|
HG22
|
A:VAL136
|
5.0
|
19.2
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 2 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:32.3
occ:1.00
|
HH11
|
A:ARG157
|
2.6
|
30.3
|
1.0
|
|
HD2
|
A:ARG114
|
3.0
|
26.2
|
1.0
|
|
O
|
A:HOH450
|
3.1
|
19.0
|
1.0
|
|
O
|
A:HOH511
|
3.1
|
32.3
|
1.0
|
|
HG2
|
A:LYS108
|
3.1
|
23.2
|
1.0
|
|
HD2
|
A:ARG157
|
3.1
|
22.1
|
1.0
|
|
HD3
|
A:ARG157
|
3.3
|
22.1
|
1.0
|
|
NH1
|
A:ARG157
|
3.4
|
25.2
|
1.0
|
|
CD
|
A:ARG157
|
3.7
|
18.4
|
1.0
|
|
HA
|
A:LYS108
|
3.7
|
23.2
|
1.0
|
|
HG3
|
A:ARG114
|
3.8
|
21.8
|
1.0
|
|
HH12
|
A:ARG157
|
3.8
|
30.3
|
1.0
|
|
CD
|
A:ARG114
|
3.9
|
21.9
|
1.0
|
|
CG
|
A:LYS108
|
4.0
|
19.3
|
1.0
|
|
HB3
|
A:LYS108
|
4.1
|
21.1
|
1.0
|
|
HG2
|
A:ARG114
|
4.1
|
21.8
|
1.0
|
|
HB2
|
A:ARG157
|
4.1
|
14.8
|
1.0
|
|
CG
|
A:ARG114
|
4.1
|
18.2
|
1.0
|
|
HD3
|
A:ARG114
|
4.3
|
26.2
|
1.0
|
|
CB
|
A:LYS108
|
4.4
|
17.6
|
1.0
|
|
HG
|
A:SER113
|
4.4
|
21.2
|
1.0
|
|
HB3
|
A:ARG157
|
4.4
|
14.8
|
1.0
|
|
CZ
|
A:ARG157
|
4.4
|
27.3
|
1.0
|
|
CA
|
A:LYS108
|
4.5
|
19.4
|
1.0
|
|
NE
|
A:ARG157
|
4.5
|
22.8
|
1.0
|
|
HD3
|
A:LYS108
|
4.6
|
25.8
|
1.0
|
|
CB
|
A:ARG157
|
4.6
|
12.4
|
1.0
|
|
HG3
|
A:LYS108
|
4.6
|
23.2
|
1.0
|
|
HG
|
A:SER106
|
4.7
|
22.5
|
1.0
|
|
HE2
|
A:LYS108
|
4.7
|
42.3
|
1.0
|
|
CG
|
A:ARG157
|
4.8
|
16.9
|
1.0
|
|
NE
|
A:ARG114
|
4.8
|
20.9
|
1.0
|
|
CD
|
A:LYS108
|
4.8
|
21.5
|
1.0
|
|
O
|
A:LYS108
|
4.9
|
21.2
|
1.0
|
|
OG
|
A:SER113
|
4.9
|
17.7
|
1.0
|
|
HE
|
A:ARG114
|
5.0
|
25.1
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 3 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:20.5
occ:1.00
|
H
|
A:ARG15
|
2.4
|
17.9
|
1.0
|
|
H
|
A:LYS171
|
2.5
|
27.5
|
1.0
|
|
HA
|
A:PRO170
|
2.8
|
29.0
|
1.0
|
|
O
|
A:HOH547
|
2.9
|
32.4
|
1.0
|
|
HG3
|
A:ARG16
|
3.0
|
29.8
|
1.0
|
|
HB2
|
A:ARG15
|
3.1
|
18.9
|
1.0
|
|
O
|
A:HOH435
|
3.1
|
26.3
|
1.0
|
|
H
|
A:ARG16
|
3.2
|
19.1
|
1.0
|
|
N
|
A:ARG15
|
3.2
|
14.9
|
1.0
|
|
N
|
A:LYS171
|
3.3
|
22.9
|
1.0
|
|
HB3
|
A:PRO170
|
3.3
|
24.5
|
1.0
|
|
HD3
|
A:ARG16
|
3.4
|
28.8
|
1.0
|
|
CA
|
A:PRO170
|
3.5
|
24.1
|
1.0
|
|
HG3
|
A:LYS171
|
3.6
|
51.3
|
1.0
|
|
HA
|
A:VAL14
|
3.6
|
14.2
|
1.0
|
|
HB2
|
A:PRO170
|
3.6
|
24.5
|
1.0
|
|
HB2
|
A:ARG16
|
3.6
|
26.4
|
1.0
|
|
N
|
A:ARG16
|
3.6
|
15.9
|
1.0
|
|
CB
|
A:PRO170
|
3.6
|
20.4
|
1.0
|
|
HB2
|
A:LYS171
|
3.7
|
30.9
|
1.0
|
|
CG
|
A:ARG16
|
3.7
|
24.8
|
1.0
|
|
CB
|
A:ARG15
|
3.8
|
15.7
|
1.0
|
|
CA
|
A:ARG15
|
3.9
|
12.5
|
1.0
|
|
C
|
A:PRO170
|
3.9
|
28.3
|
1.0
|
|
C
|
A:ARG15
|
4.0
|
14.4
|
1.0
|
|
CD
|
A:ARG16
|
4.0
|
24.0
|
1.0
|
|
CB
|
A:ARG16
|
4.1
|
22.0
|
1.0
|
|
HG3
|
A:ARG15
|
4.2
|
24.5
|
1.0
|
|
C
|
A:VAL14
|
4.3
|
11.2
|
1.0
|
|
CB
|
A:LYS171
|
4.3
|
25.8
|
1.0
|
|
CG
|
A:LYS171
|
4.3
|
42.8
|
1.0
|
|
HD2
|
A:ARG16
|
4.3
|
28.8
|
1.0
|
|
CA
|
A:VAL14
|
4.4
|
11.8
|
1.0
|
|
CA
|
A:LYS171
|
4.4
|
21.1
|
1.0
|
|
CA
|
A:ARG16
|
4.5
|
17.6
|
1.0
|
|
O
|
A:HOH442
|
4.5
|
21.3
|
1.0
|
|
HD2
|
A:LYS171
|
4.5
|
72.5
|
1.0
|
|
O
|
A:THR13
|
4.6
|
16.9
|
1.0
|
|
CG
|
A:ARG15
|
4.6
|
20.4
|
1.0
|
|
HG2
|
A:ARG16
|
4.6
|
29.8
|
1.0
|
|
HB3
|
A:ARG15
|
4.6
|
18.9
|
1.0
|
|
HD2
|
A:ARG15
|
4.6
|
19.9
|
1.0
|
|
HH11
|
A:ARG15
|
4.6
|
20.8
|
1.0
|
|
HG13
|
A:VAL14
|
4.6
|
22.0
|
1.0
|
|
HE3
|
A:LYS171
|
4.7
|
85.4
|
1.0
|
|
HA
|
A:ARG15
|
4.8
|
15.0
|
1.0
|
|
N
|
A:PRO170
|
4.8
|
20.9
|
1.0
|
|
CD
|
A:LYS171
|
4.9
|
60.4
|
1.0
|
|
O
|
A:ARG15
|
4.9
|
19.3
|
1.0
|
|
HB3
|
A:ARG16
|
5.0
|
26.4
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 4 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl306
b:19.3
occ:1.00
|
HD22
|
B:ASN42
|
2.4
|
18.4
|
1.0
|
|
HE1
|
A:TRP82
|
2.4
|
22.7
|
1.0
|
|
HZ1
|
A:LYS86
|
2.5
|
39.9
|
1.0
|
|
HB3
|
B:ASN42
|
3.0
|
16.5
|
1.0
|
|
ND2
|
B:ASN42
|
3.3
|
15.3
|
1.0
|
|
HB3
|
A:TYR174
|
3.3
|
20.0
|
1.0
|
|
NE1
|
A:TRP82
|
3.3
|
18.9
|
1.0
|
|
NZ
|
A:LYS86
|
3.3
|
33.3
|
1.0
|
|
HE2
|
A:LYS86
|
3.4
|
29.1
|
1.0
|
|
HZ3
|
A:LYS86
|
3.6
|
39.9
|
1.0
|
|
HD2
|
A:PRO175
|
3.6
|
27.0
|
1.0
|
|
CE
|
A:LYS86
|
3.8
|
24.3
|
1.0
|
|
CB
|
B:ASN42
|
3.8
|
13.7
|
1.0
|
|
HD21
|
B:ASN42
|
3.8
|
18.4
|
1.0
|
|
HE3
|
A:LYS86
|
3.8
|
29.1
|
1.0
|
|
HZ2
|
A:LYS86
|
3.9
|
39.9
|
1.0
|
|
HB2
|
B:ASN42
|
3.9
|
16.5
|
1.0
|
|
HD2
|
A:TYR174
|
4.0
|
23.9
|
1.0
|
|
CG
|
B:ASN42
|
4.0
|
14.7
|
1.0
|
|
HZ2
|
A:TRP82
|
4.0
|
17.3
|
1.0
|
|
CB
|
A:TYR174
|
4.1
|
16.6
|
1.0
|
|
CD1
|
A:TRP82
|
4.2
|
19.3
|
1.0
|
|
HD1
|
A:TRP82
|
4.2
|
23.2
|
1.0
|
|
CD2
|
A:TYR174
|
4.2
|
19.9
|
1.0
|
|
CE2
|
A:TRP82
|
4.3
|
16.4
|
1.0
|
|
CG
|
A:TYR174
|
4.3
|
18.2
|
1.0
|
|
HB2
|
A:TYR174
|
4.3
|
20.0
|
1.0
|
|
O
|
B:HOH450
|
4.3
|
24.6
|
1.0
|
|
HG2
|
A:PRO175
|
4.5
|
27.2
|
1.0
|
|
CZ2
|
A:TRP82
|
4.5
|
14.4
|
1.0
|
|
CD
|
A:PRO175
|
4.6
|
22.5
|
1.0
|
|
O
|
B:MET41
|
4.7
|
16.0
|
1.0
|
|
O
|
A:HOH513
|
4.7
|
26.9
|
1.0
|
|
O
|
B:ASN42
|
4.8
|
16.8
|
1.0
|
|
O
|
B:HOH429
|
5.0
|
25.6
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 5 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:17.2
occ:1.00
|
HH12
|
B:ARG11
|
2.2
|
18.9
|
1.0
|
|
HG1
|
B:THR13
|
2.2
|
20.6
|
1.0
|
|
HD3
|
B:PRO137
|
2.6
|
23.3
|
1.0
|
|
HH22
|
B:ARG11
|
2.7
|
18.5
|
1.0
|
|
HG23
|
B:THR13
|
2.7
|
18.2
|
1.0
|
|
H1'2
|
B:FMN301
|
2.8
|
15.7
|
1.0
|
|
HB3
|
A:PRO38
|
2.9
|
14.9
|
1.0
|
|
HD2
|
B:PRO137
|
3.0
|
23.3
|
1.0
|
|
O3'
|
B:FMN301
|
3.0
|
13.7
|
1.0
|
|
NH1
|
B:ARG11
|
3.0
|
15.8
|
1.0
|
|
OG1
|
B:THR13
|
3.0
|
17.1
|
1.0
|
|
CD
|
B:PRO137
|
3.2
|
19.4
|
1.0
|
|
H3'
|
B:FMN301
|
3.2
|
18.7
|
1.0
|
|
HA
|
B:THR13
|
3.2
|
17.5
|
1.0
|
|
HB2
|
A:PRO38
|
3.3
|
14.9
|
1.0
|
|
NH2
|
B:ARG11
|
3.4
|
15.4
|
1.0
|
|
CG2
|
B:THR13
|
3.5
|
15.1
|
1.0
|
|
CB
|
A:PRO38
|
3.5
|
12.4
|
1.0
|
|
HA
|
B:VAL136
|
3.6
|
18.4
|
1.0
|
|
CB
|
B:THR13
|
3.6
|
17.0
|
1.0
|
|
C3'
|
B:FMN301
|
3.6
|
15.6
|
1.0
|
|
HG2
|
B:PRO137
|
3.6
|
22.7
|
1.0
|
|
C1'
|
B:FMN301
|
3.6
|
13.1
|
1.0
|
|
HO3'
|
B:FMN301
|
3.6
|
16.5
|
1.0
|
|
HH11
|
B:ARG11
|
3.7
|
18.9
|
1.0
|
|
CZ
|
B:ARG11
|
3.7
|
15.2
|
1.0
|
|
H1'1
|
B:FMN301
|
3.7
|
15.7
|
1.0
|
|
CA
|
B:THR13
|
3.7
|
14.6
|
1.0
|
|
CG
|
B:PRO137
|
3.9
|
18.9
|
1.0
|
|
HG21
|
B:THR13
|
3.9
|
18.2
|
1.0
|
|
HG23
|
B:VAL136
|
3.9
|
19.9
|
1.0
|
|
HG3
|
A:PRO38
|
3.9
|
13.1
|
1.0
|
|
H9
|
B:FMN301
|
4.0
|
13.8
|
1.0
|
|
N
|
B:THR13
|
4.0
|
15.0
|
1.0
|
|
H
|
B:THR13
|
4.1
|
18.0
|
1.0
|
|
HG3
|
B:PRO137
|
4.1
|
22.7
|
1.0
|
|
HH21
|
B:ARG11
|
4.2
|
18.5
|
1.0
|
|
HG22
|
B:THR13
|
4.3
|
18.2
|
1.0
|
|
C2'
|
B:FMN301
|
4.3
|
17.8
|
1.0
|
|
CG
|
A:PRO38
|
4.3
|
10.9
|
1.0
|
|
O5'
|
B:FMN301
|
4.4
|
12.7
|
1.0
|
|
N
|
B:PRO137
|
4.5
|
14.2
|
1.0
|
|
CA
|
B:VAL136
|
4.5
|
15.3
|
1.0
|
|
HB
|
B:THR13
|
4.5
|
20.4
|
1.0
|
|
O
|
B:SER135
|
4.6
|
13.0
|
1.0
|
|
O3P
|
B:FMN301
|
4.6
|
14.8
|
1.0
|
|
H5'1
|
B:FMN301
|
4.7
|
14.5
|
1.0
|
|
O
|
B:HOH426
|
4.8
|
15.4
|
1.0
|
|
C
|
B:LYS12
|
4.8
|
19.3
|
1.0
|
|
H2'
|
B:FMN301
|
4.8
|
21.3
|
1.0
|
|
CG2
|
B:VAL136
|
4.8
|
16.5
|
1.0
|
|
CA
|
A:PRO38
|
4.8
|
14.9
|
1.0
|
|
HA
|
A:PRO38
|
4.8
|
17.9
|
1.0
|
|
N10
|
B:FMN301
|
4.8
|
14.4
|
1.0
|
|
C9
|
B:FMN301
|
4.9
|
11.5
|
1.0
|
|
C4'
|
B:FMN301
|
4.9
|
16.7
|
1.0
|
|
HG2
|
A:PRO38
|
4.9
|
13.1
|
1.0
|
|
C5'
|
B:FMN301
|
4.9
|
12.1
|
1.0
|
|
HD13
|
B:LEU125
|
4.9
|
16.6
|
1.0
|
|
HB
|
B:VAL136
|
5.0
|
19.7
|
1.0
|
|
NE
|
B:ARG11
|
5.0
|
14.2
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 6q1l
Go back to
Chlorine Binding Sites List in 6q1l
Chlorine binding site 6 out
of 6 in the Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Oxidized Iodotyrosine Deiodinase (Iyd) Bound to Fmn and 3-Iodo-L-Tyrosine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:19.2
occ:1.00
|
HD22
|
A:ASN42
|
2.5
|
16.4
|
1.0
|
|
HZ1
|
B:LYS86
|
2.5
|
39.9
|
1.0
|
|
HE1
|
B:TRP82
|
2.6
|
19.4
|
1.0
|
|
HB3
|
A:ASN42
|
3.2
|
16.6
|
1.0
|
|
HE2
|
B:LYS86
|
3.2
|
28.6
|
1.0
|
|
NZ
|
B:LYS86
|
3.2
|
33.3
|
1.0
|
|
HB3
|
B:TYR174
|
3.3
|
17.6
|
1.0
|
|
HE3
|
B:LYS86
|
3.3
|
28.6
|
1.0
|
|
ND2
|
A:ASN42
|
3.3
|
13.7
|
1.0
|
|
HD2
|
B:PRO175
|
3.3
|
23.6
|
1.0
|
|
NE1
|
B:TRP82
|
3.4
|
16.2
|
1.0
|
|
CE
|
B:LYS86
|
3.5
|
23.8
|
1.0
|
|
HZ3
|
B:LYS86
|
3.7
|
39.9
|
1.0
|
|
HZ2
|
B:LYS86
|
3.8
|
39.9
|
1.0
|
|
HD21
|
A:ASN42
|
3.8
|
16.4
|
1.0
|
|
HZ2
|
B:TRP82
|
4.0
|
20.7
|
1.0
|
|
CB
|
A:ASN42
|
4.0
|
13.8
|
1.0
|
|
HD2
|
B:TYR174
|
4.0
|
19.7
|
1.0
|
|
CB
|
B:TYR174
|
4.1
|
14.7
|
1.0
|
|
CG
|
A:ASN42
|
4.1
|
13.4
|
1.0
|
|
HB2
|
A:ASN42
|
4.2
|
16.6
|
1.0
|
|
CD
|
B:PRO175
|
4.3
|
19.6
|
1.0
|
|
CD2
|
B:TYR174
|
4.3
|
16.4
|
1.0
|
|
CE2
|
B:TRP82
|
4.3
|
18.4
|
1.0
|
|
CG
|
B:TYR174
|
4.3
|
13.9
|
1.0
|
|
HB2
|
B:TYR174
|
4.4
|
17.6
|
1.0
|
|
CD1
|
B:TRP82
|
4.4
|
18.7
|
1.0
|
|
HD1
|
B:TRP82
|
4.5
|
22.4
|
1.0
|
|
HD3
|
B:PRO175
|
4.5
|
23.6
|
1.0
|
|
CZ2
|
B:TRP82
|
4.5
|
17.2
|
1.0
|
|
O
|
A:HOH477
|
4.7
|
32.6
|
1.0
|
|
O
|
B:HOH419
|
4.8
|
33.9
|
1.0
|
|
O
|
A:MET41
|
4.8
|
14.0
|
1.0
|
|
OE2
|
B:GLU85
|
4.8
|
30.8
|
1.0
|
|
O
|
A:HOH471
|
4.8
|
32.5
|
1.0
|
|
HG2
|
B:PRO175
|
4.9
|
27.7
|
1.0
|
|
O
|
A:ASN42
|
4.9
|
14.2
|
1.0
|
|
CD
|
B:LYS86
|
5.0
|
23.8
|
1.0
|
|
Reference:
Z.Sun,
J.M.Kavran,
S.E.Rokita.
Crystal Structure of Oxidized Tn Iyd Bound to Fmn and 3-Iodo-L-Tyrosine To Be Published.
Page generated: Mon Jul 29 13:42:47 2024
|
