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Chlorine in PDB 6q40: A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers

Protein crystallography data

The structure of A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers, PDB code: 6q40 was solved by J.R.Mesters, R.Saleem-Batcha, A.Sanchez-Vallet, B.P.H.J.Thomma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.45 / 2.41
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 119.390, 119.390, 157.670, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 22

Chlorine Binding Sites:

The binding sites of Chlorine atom in the A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers (pdb code 6q40). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers, PDB code: 6q40:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6q40

Go back to Chlorine Binding Sites List in 6q40
Chlorine binding site 1 out of 3 in the A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:47.6
occ:1.00
O B:HOH230 3.0 44.8 1.0
O A:HOH242 3.1 40.3 1.0
N A:ASP12 3.4 32.0 1.0
CA A:PHE11 3.7 29.3 1.0
CB A:PHE11 3.7 33.3 1.0
NH2 B:ARG2 3.7 49.6 1.0
CA A:ALA49 3.8 31.1 1.0
O A:ARG48 3.8 34.8 1.0
CD1 A:PHE11 3.9 30.4 1.0
N A:ALA49 3.9 24.7 1.0
C A:ARG48 3.9 29.9 1.0
CG A:ARG48 3.9 55.7 1.0
CG A:ASP12 4.0 48.7 1.0
C A:PHE11 4.1 33.5 1.0
OD2 A:ASP12 4.2 61.4 1.0
CB A:ASP12 4.2 38.6 1.0
CG A:PHE11 4.3 32.7 1.0
CB A:ARG48 4.3 39.4 1.0
OD1 A:ASP12 4.4 52.5 1.0
CA A:ASP12 4.4 32.7 1.0
CB A:ALA49 4.5 28.2 1.0
CZ B:ARG2 4.7 53.8 1.0
CA A:ARG48 4.8 33.2 1.0
C A:ALA49 4.9 38.2 1.0
O A:GLN10 4.9 42.7 1.0

Chlorine binding site 2 out of 3 in 6q40

Go back to Chlorine Binding Sites List in 6q40
Chlorine binding site 2 out of 3 in the A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl104

b:53.7
occ:1.00
O B:HOH225 3.1 42.2 0.9
N B:ASP12 3.3 42.1 1.0
CA B:PHE11 3.7 40.2 1.0
NH2 A:ARG2 3.7 48.6 1.0
CA B:ALA49 3.7 44.2 1.0
CB B:PHE11 3.8 38.3 1.0
N B:ALA49 3.9 39.2 1.0
CD1 B:PHE11 3.9 33.9 1.0
O B:ARG48 3.9 52.4 1.0
C B:ARG48 3.9 48.3 1.0
CG B:ASP12 3.9 55.7 1.0
C B:PHE11 4.1 41.0 1.0
OD1 B:ASP12 4.1 62.2 1.0
CB B:ASP12 4.2 48.1 1.0
OD2 B:ASP12 4.3 64.2 1.0
CG B:ARG48 4.3 62.2 1.0
CD B:ARG48 4.3 80.0 1.0
CG B:PHE11 4.3 43.4 1.0
CB B:ARG48 4.3 48.3 1.0
CA B:ASP12 4.4 42.0 1.0
CB B:ALA49 4.4 39.5 1.0
CZ A:ARG2 4.6 60.4 1.0
CA B:ARG48 4.8 45.3 1.0
C B:ALA49 4.9 48.0 1.0
O B:GLN10 5.0 45.2 1.0

Chlorine binding site 3 out of 3 in 6q40

Go back to Chlorine Binding Sites List in 6q40
Chlorine binding site 3 out of 3 in the A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of A Secreted Lysm Effector of the Wheat Pathogen Zymoseptoria Tritici Protects the Fungal Hyphae Against Chitinase Hydrolysis Through Ligand-Dependent Polymerisation of Lysm Homodimers within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl101

b:66.6
occ:1.00
N C:ASP12 3.2 58.1 1.0
NH2 D:ARG2 3.4 89.3 1.0
CA C:PHE11 3.4 59.7 1.0
CB C:PHE11 3.5 58.9 1.0
C C:PHE11 3.8 63.1 1.0
CD1 C:PHE11 3.9 55.4 1.0
CG C:ASP12 4.0 86.9 1.0
OD1 C:ASP12 4.1 97.0 1.0
CG C:PHE11 4.2 60.5 1.0
CB C:ARG48 4.2 75.8 1.0
OD2 C:ASP12 4.3 94.3 1.0
CB C:ASP12 4.3 71.8 1.0
CA C:ALA49 4.3 54.9 1.0
CA C:ASP12 4.3 69.2 1.0
N C:ALA49 4.3 52.0 1.0
C C:ARG48 4.4 59.1 1.0
O C:ARG48 4.4 62.2 1.0
CZ D:ARG2 4.4 98.0 1.0
O C:GLN10 4.7 78.9 1.0
N C:PHE11 4.8 70.4 1.0
CD C:ARG48 4.8 97.2 1.0
CB C:ALA49 5.0 53.5 1.0

Reference:

A.Sanchez-Vallet, L.Rodriguez-Moreno, D.-J.Valkenburg, R.Saleem-Batcha, S.Wawra, D.Croll, J.R.Mesters, B.P.H.J.Thomma. A Secreted Lysm Effector Protects Fungal Hyphae Through Chitin-Dependent Homodimer Polymerization Biorxiv 2019.
DOI: 10.1101/787820
Page generated: Mon Jul 29 13:44:05 2024

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