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Chlorine in PDB 6q8r: Hew Lysozyme Under 2 Kbar of Argon

Enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon

All present enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon:
3.2.1.17;

Protein crystallography data

The structure of Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r was solved by T.Prange, P.Carpentier, N.Colloc'h, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.95 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.830, 77.830, 37.990, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.8

Other elements in 6q8r:

The structure of Hew Lysozyme Under 2 Kbar of Argon also contains other interesting chemical elements:

Sodium (Na) 1 atom
Argon (Ar) 8 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Hew Lysozyme Under 2 Kbar of Argon (pdb code 6q8r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 1 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:14.0
occ:1.00
 OH A:TYR23 3.0 9.0 1.0
O A:HOH442 3.1 22.8 1.0
O A:HOH357 3.3 15.4 1.0
CZ A:TYR23 3.7 8.3 1.0
CE2 A:TYR23 3.7 8.3 1.0
CA A:GLY104 4.2 10.3 1.0
O A:ARG21 4.5 13.2 1.0
N A:GLY104 4.8 10.7 1.0
CE1 A:TYR23 4.9 7.8 1.0
CD2 A:TYR23 4.9 8.0 1.0
O A:HOH327 5.0 18.2 1.0

Chlorine binding site 2 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 2 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:20.5
occ:1.00
 OG A:SER24 2.9 14.5 1.0
N A:GLY26 3.1 10.0 1.0
O A:HOH435 3.2 30.6 1.0
CB A:SER24 3.4 12.8 1.0
CA A:GLY26 3.4 9.1 1.0
CA A:GLN121 3.6 17.5 1.0
CD1 A:ILE124 3.7 21.3 1.0
CB A:GLN121 4.0 19.9 1.0
N A:GLN121 4.0 15.7 1.0
N A:LEU25 4.2 10.8 1.0
CG1 A:ILE124 4.2 19.5 1.0
CG A:GLN121 4.3 22.1 1.0
C A:SER24 4.3 12.1 1.0
C A:LEU25 4.3 9.1 1.0
O A:VAL120 4.3 13.6 1.0
C A:VAL120 4.4 15.1 1.0
CG2 A:VAL120 4.4 14.9 1.0
CA A:SER24 4.5 11.7 1.0
C A:GLY26 4.5 9.0 1.0
N A:ASN27 4.6 9.4 1.0
O A:SER24 4.7 12.3 1.0
CA A:LEU25 4.7 10.6 1.0
C A:GLN121 4.9 15.2 1.0
O A:HOH500 4.9 40.0 1.0

Chlorine binding site 3 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 3 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:18.4
occ:1.00
 O A:HOH390 3.1 12.4 1.0
O A:HOH403 3.2 33.1 1.0
O A:HOH431 3.2 25.7 1.0
N A:THR69 3.3 12.7 1.0
O A:THR69 3.4 13.5 1.0
CA A:GLY67 3.5 12.2 1.0
N A:ARG68 3.5 13.8 1.0
C A:GLY67 3.5 14.2 1.0
OD1 A:ASN65 3.6 12.7 1.0
C A:THR69 3.6 13.9 1.0
N A:GLY67 3.6 11.5 1.0
OG A:SER72 3.9 15.0 1.0
CA A:THR69 3.9 12.6 1.0
O A:HOH427 4.1 12.5 1.0
O A:GLY67 4.2 15.6 1.0
N A:PRO70 4.2 17.2 1.0
OD1 A:ASP66 4.3 9.5 1.0
C A:ARG68 4.3 13.4 1.0
CB A:THR69 4.3 11.5 1.0
CA A:ARG68 4.4 14.3 0.5
CA A:ARG68 4.4 13.8 0.5
CA A:PRO70 4.7 18.6 1.0
C A:ASP66 4.7 9.9 1.0
NA A:NA213 4.8 10.0 1.0
CG A:ASN65 4.8 12.8 1.0
OG1 A:THR69 4.9 11.1 1.0
N A:ASP66 4.9 9.8 1.0

Chlorine binding site 4 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 4 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:23.2
occ:1.00
 O A:HOH305 3.3 36.0 1.0
O A:HOH368 3.4 17.2 1.0
N A:ILE88 3.4 11.3 1.0
CG1 A:ILE88 3.7 9.8 1.0
O A:HOH456 3.8 40.2 1.0
CA A:ASP87 3.9 14.0 1.0
C A:ASP87 4.1 11.3 1.0
NH2 A:ARG14 4.1 25.5 1.0
CB A:ALA11 4.2 12.2 1.0
CE1 A:HIS15 4.2 17.3 1.0
CZ A:PHE3 4.2 11.8 1.0
O A:SER86 4.2 15.0 1.0
OD1 A:ASP87 4.2 18.6 1.0
CB A:ILE88 4.3 10.0 1.0
CG2 A:ILE88 4.3 11.6 1.0
CA A:ILE88 4.3 10.2 1.0
CG A:ASP87 4.5 20.6 1.0
CE2 A:PHE3 4.7 10.6 1.0
CD1 A:ILE88 4.7 10.8 1.0
CB A:ASP87 4.7 15.8 1.0
ND1 A:HIS15 4.8 19.2 1.0
N A:ASP87 4.8 13.0 1.0
C A:SER86 4.9 14.1 1.0
O A:HOH428 5.0 25.2 1.0

Chlorine binding site 5 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 5 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:40.0
occ:1.00
 O A:HOH345 3.1 49.2 1.0
O A:HOH425 3.3 33.2 1.0
O A:HOH395 3.5 31.5 1.0
CE2 A:PHE38 3.7 10.8 1.0
CB A:ARG5 4.2 14.5 1.0
NZ A:LYS33 4.2 20.2 1.0
CZ3 A:TRP123 4.2 17.1 1.0
CD A:ARG5 4.4 16.7 1.0
CE A:LYS33 4.4 17.1 1.0
CZ A:PHE38 4.5 10.4 1.0
CD A:LYS33 4.5 13.8 1.0
CD2 A:PHE38 4.6 10.2 1.0
NE A:ARG5 4.8 18.5 1.0
CG A:ARG5 4.8 15.7 1.0

Chlorine binding site 6 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 6 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:25.7
occ:1.00
 AR A:AR217 3.2 20.0 0.6
ND2 A:ASN65 3.3 16.5 1.0
CB A:PRO79 3.6 9.8 1.0
CA A:PRO79 3.8 9.8 1.0
CB A:ASN65 3.9 11.4 1.0
N A:PRO79 3.9 10.9 1.0
CG A:ASN65 4.1 12.8 1.0
CD A:PRO79 4.3 10.5 1.0
CG A:PRO79 4.4 11.1 1.0
O A:ASN65 4.4 8.9 1.0
C A:ILE78 4.5 10.7 1.0
O A:ILE78 4.6 10.1 1.0
ND2 A:ASN74 5.0 12.7 1.0
CA A:ASN65 5.0 10.8 1.0
C A:ASN65 5.0 9.8 1.0

Chlorine binding site 7 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 7 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:28.4
occ:1.00
 O A:HOH464 2.7 32.9 1.0
N A:ASN74 3.2 14.2 1.0
NE A:ARG73 3.3 39.1 1.0
C A:ASN74 3.6 13.4 1.0
O A:ASN74 3.7 13.0 1.0
CB A:ARG73 3.7 20.1 1.0
O A:HOH453 3.7 35.7 1.0
CA A:ASN74 3.9 12.8 1.0
O A:HOH487 3.9 36.4 1.0
N A:LEU75 4.0 13.7 1.0
CA A:ARG73 4.0 16.4 1.0
CD2 A:LEU75 4.0 19.9 1.0
CD A:ARG73 4.0 30.4 1.0
C A:ARG73 4.1 14.0 1.0
CZ A:ARG73 4.3 47.6 1.0
NH2 A:ARG73 4.3 46.8 1.0
CA A:LEU75 4.4 15.1 1.0
CB A:ASN74 4.4 12.5 1.0
CG A:ARG73 4.5 24.7 1.0
CG A:LEU75 4.5 17.2 1.0

Chlorine binding site 8 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 8 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:23.5
occ:1.00
 O A:HOH366 3.0 10.7 1.0
AR A:AR219 3.4 17.5 0.5
CG2 A:VAL2 3.7 11.3 1.0
N A:VAL2 4.1 11.3 1.0
O A:HOH495 4.1 32.6 1.0
CB A:VAL2 4.4 11.8 1.0
CA A:LYS1 4.5 11.5 1.0
C A:LYS1 4.5 11.1 1.0
N A:LYS1 4.6 11.7 1.0
NE2 A:GLN41 4.9 9.9 1.0
CA A:VAL2 4.9 11.7 1.0

Chlorine binding site 9 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 9 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:27.7
occ:1.00
 N A:GLU7 3.1 11.9 1.0
O A:HOH441 3.1 16.6 1.0
CA A:GLY4 3.4 12.1 1.0
O A:HOH421 3.4 40.5 1.0
CB A:GLU7 3.5 13.4 1.0
N A:CYS6 3.6 15.7 1.0
C A:GLY4 3.6 12.3 1.0
CA A:GLU7 3.8 12.7 1.0
N A:ARG5 3.9 13.8 1.0
C A:CYS6 4.0 13.7 1.0
CB A:CYS6 4.0 17.6 1.0
CA A:CYS6 4.0 17.0 1.0
O A:GLY4 4.1 12.6 1.0
N A:GLY4 4.3 12.8 1.0
C A:ARG5 4.4 14.1 1.0
OE1 A:GLU7 4.7 16.3 1.0
CA A:ARG5 4.8 14.1 1.0
CG A:GLU7 4.8 13.3 1.0

Chlorine binding site 10 out of 12 in 6q8r

Go back to Chlorine Binding Sites List in 6q8r
Chlorine binding site 10 out of 12 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:25.5
occ:0.70
 O A:HOH375 3.0 18.0 1.0
ND2 A:ASN44 3.3 11.3 0.5
O A:HOH337 3.4 37.2 1.0
CB A:ALA42 3.6 8.4 1.0
O A:HOH458 4.1 24.8 1.0
CA A:ALA42 4.2 8.3 1.0
CG A:ASN44 4.2 10.3 0.5
OD1 A:ASN44 4.3 9.8 0.5
O A:THR43 4.4 10.8 1.0
N A:THR43 4.6 8.8 1.0
C A:ALA42 4.8 8.1 1.0
O A:SER36 4.8 9.7 1.0
CA A:SER36 4.9 9.1 1.0

Reference:

T.Prange, P.Carpentier. Labelling Protein Crystals By Argon at 2 Kbar To Be Published.
Page generated: Mon Jul 29 13:49:18 2024

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