Chlorine in PDB 6qgs: Crystal Structure of APT1 Bound to Palmitic Acid.

Protein crystallography data

The structure of Crystal Structure of APT1 Bound to Palmitic Acid., PDB code: 6qgs was solved by M.Audagnotto, M.J.Marcaida, S.Ho, F.Pojer, G.Van Der Goot, M.Dal Peraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.95 / 2.76
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.660, 81.660, 441.946, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of APT1 Bound to Palmitic Acid. (pdb code 6qgs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of APT1 Bound to Palmitic Acid., PDB code: 6qgs:

Chlorine binding site 1 out of 1 in 6qgs

Go back to Chlorine Binding Sites List in 6qgs
Chlorine binding site 1 out of 1 in the Crystal Structure of APT1 Bound to Palmitic Acid.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of APT1 Bound to Palmitic Acid. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:10.2
occ:1.00
N A:ALA16 3.4 23.9 1.0
CG A:LYS50 3.7 28.0 1.0
CB A:PRO15 3.8 26.7 1.0
O A:HOH423 3.8 29.1 1.0
CA A:PRO15 3.9 27.1 1.0
CB A:ALA20 4.0 35.2 1.0
CB A:LYS50 4.1 22.8 1.0
CB A:ALA16 4.1 29.9 1.0
C A:PRO15 4.2 24.9 1.0
CA A:ALA16 4.4 26.9 1.0
CE A:LYS50 4.4 31.5 1.0
CD A:LYS50 4.5 26.5 1.0
O A:ARG18 4.8 53.8 1.0
O A:ALA16 4.8 37.0 1.0

Reference:

M.Audagnotto, S.Ho, L.Abrami, M.J.Marcaida, G.Fonti, F.Pojer, G.Van Der Goot, M.Dal Peraro. Insights Into the Molecular Mechanism of Depalmitoylation By Human Acyl-Protein Thioesterases To Be Published.
Page generated: Sat Dec 12 13:33:41 2020

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