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Chlorine in PDB 6qoh: Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine)

Enzymatic activity of Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine)

All present enzymatic activity of Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine):
2.1.1.228;

Protein crystallography data

The structure of Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine), PDB code: 6qoh was solved by S.E.Thomas, A.J.Whitehouse, A.G.Coyne, C.Abell, V.Mendes, T.L.Blundell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.32 / 1.66
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.652, 79.108, 86.318, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine) (pdb code 6qoh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine), PDB code: 6qoh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6qoh

Go back to Chlorine Binding Sites List in 6qoh
Chlorine binding site 1 out of 2 in the Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:56.9
occ:1.00
 CL6 A:6GU301 0.0 56.9 1.0
C6 A:6GU301 1.7 25.3 1.0
C5 A:6GU301 2.6 22.0 1.0
N1 A:6GU301 2.8 27.4 1.0
N7 A:6GU301 3.0 24.2 1.0
N A:THR84 3.1 20.0 1.0
O A:VAL131 3.2 22.3 1.0
CB A:PRO83 3.2 24.3 1.0
CA A:PRO83 3.3 22.2 1.0
C A:PRO83 3.4 23.4 1.0
CB A:ALA144 3.4 23.4 1.0
CA A:SER132 3.8 17.2 0.7
CA A:SER132 3.8 17.7 0.3
O A:THR84 3.9 22.2 1.0
C4 A:6GU301 3.9 27.1 1.0
N A:ILE133 3.9 19.0 1.0
C2 A:6GU301 4.0 26.5 1.0
C A:THR84 4.0 22.2 1.0
CA A:THR84 4.0 19.8 1.0
C A:VAL131 4.1 18.5 1.0
C A:SER132 4.3 18.5 1.0
O A:PRO83 4.3 24.9 1.0
C8 A:6GU301 4.3 24.1 1.0
N A:SER132 4.5 17.4 1.0
N3 A:6GU301 4.5 26.4 1.0
CG1 A:ILE133 4.5 19.0 1.0
CG2 A:ILE133 4.5 25.5 1.0
CG A:PRO83 4.5 26.4 1.0
CB A:SER132 4.7 20.7 0.7
CB A:SER132 4.7 19.8 0.3
N A:PRO85 4.7 21.1 1.0
N9 A:6GU301 4.8 25.9 1.0
N A:PRO83 4.8 19.4 1.0
CB A:ILE133 4.9 18.7 1.0
CA A:ALA144 4.9 23.2 1.0
OG A:SER132 5.0 17.1 0.3

Chlorine binding site 2 out of 2 in 6qoh

Go back to Chlorine Binding Sites List in 6qoh
Chlorine binding site 2 out of 2 in the Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus in Complex with Fragment 11 (2-Amino-6- Chloropurine) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:42.9
occ:1.00
 CL6 B:6GU301 0.0 42.9 1.0
C6 B:6GU301 1.7 27.3 1.0
C5 B:6GU301 2.7 22.9 1.0
N1 B:6GU301 2.7 24.9 1.0
N7 B:6GU301 3.2 25.3 1.0
O B:VAL131 3.2 23.9 1.0
CB B:PRO83 3.3 22.1 1.0
CB B:ALA144 3.4 22.3 1.0
N B:THR84 3.4 20.7 1.0
CA B:PRO83 3.5 19.4 1.0
N B:ILE133 3.6 20.9 1.0
CA B:SER132 3.7 19.1 0.6
CA B:SER132 3.7 20.4 0.4
C B:PRO83 3.8 21.3 1.0
C4 B:6GU301 4.0 27.4 1.0
C2 B:6GU301 4.0 26.2 1.0
C B:SER132 4.1 26.9 1.0
CG2 B:ILE133 4.1 21.7 1.0
C B:VAL131 4.1 21.3 1.0
O B:THR84 4.1 21.5 1.0
CG1 B:ILE133 4.2 20.7 1.0
C B:THR84 4.3 19.6 1.0
N B:SER132 4.4 19.8 1.0
CA B:THR84 4.4 19.6 1.0
N3 B:6GU301 4.5 25.6 1.0
C8 B:6GU301 4.5 30.5 1.0
CB B:ILE133 4.5 17.7 1.0
CG B:PRO83 4.6 32.8 1.0
CA B:ILE133 4.7 18.9 1.0
O B:PRO83 4.7 23.2 1.0
CB B:SER132 4.8 23.0 0.6
CB B:SER132 4.8 22.9 0.4
CA B:ALA144 4.9 20.8 1.0
N9 B:6GU301 4.9 28.3 1.0
N B:PRO83 4.9 20.5 1.0

Reference:

S.E.Thomas, A.J.Whitehouse, A.G.Coyne, C.Abell, V.Mendes, T.L.Blundell. Crystal Structure of Trmd, A Trna-(N1G37) Methyltransferase, From Mycobacterium Abscessus To Be Published.
Page generated: Mon Jul 29 14:04:11 2024

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