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Chlorine in PDB 6quh: Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength

Protein crystallography data

The structure of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength, PDB code: 6quh was solved by T.Huyton, D.Gorlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.16 / 1.50
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.476, 99.307, 102.011, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 21.9

Other elements in 6quh:

The structure of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Copper (Cu) 6 atoms
Sodium (Na) 11 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Chlorine atom in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength (pdb code 6quh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 18 binding sites of Chlorine where determined in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength, PDB code: 6quh:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 18 in 6quh

Go back to Chlorine Binding Sites List in 6quh
Chlorine binding site 1 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:20.0
occ:0.52
 OD1 A:ASP82 2.8 15.9 1.0
O A:GLN69 2.8 15.0 1.0
NZ A:LYS85 2.9 18.3 1.0
OD2 A:ASP82 3.2 15.8 1.0
CG A:ASP82 3.3 16.3 1.0
O A:CYS70 3.3 15.4 1.0
CA A:CYS70 3.3 14.7 1.0
C A:CYS70 3.5 14.1 1.0
CE1 A:TYR74 3.5 17.9 1.0
CB A:PHE84 3.6 15.5 1.0
CD2 A:PHE84 3.7 14.4 1.0
CD1 A:TYR74 3.7 16.2 1.0
C A:GLN69 3.8 14.8 1.0
O A:SER72 3.9 15.2 1.0
CB A:SER72 3.9 18.7 1.0
CG A:LYS85 3.9 15.6 1.0
N A:CYS70 3.9 14.4 1.0
N A:SER72 4.0 17.2 1.0
CG A:PHE84 4.0 13.2 1.0
CE A:LYS85 4.2 20.2 1.0
N A:PHE71 4.3 14.3 1.0
N A:LYS85 4.3 14.1 1.0
CA A:SER72 4.4 15.3 1.0
OG A:SER72 4.4 18.3 1.0
CD A:LYS85 4.5 14.8 1.0
CB A:CYS70 4.5 14.6 1.0
C A:SER72 4.5 13.8 1.0
CZ A:TYR74 4.6 15.5 1.0
CA A:PHE84 4.6 16.2 1.0
CE2 A:PHE84 4.7 16.2 1.0
CB A:ASP82 4.7 15.3 1.0
C A:PHE71 4.8 15.1 1.0
N A:PHE84 4.8 13.2 1.0
C A:PHE84 4.9 15.5 1.0
CB A:LYS85 4.9 15.8 1.0
OH A:TYR74 4.9 16.4 1.0
CG A:TYR74 5.0 16.9 1.0

Chlorine binding site 2 out of 18 in 6quh

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Chlorine binding site 2 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:20.1
occ:0.56
 CL A:CL309 2.7 22.2 0.6
O3 A:CRO66 2.8 15.9 1.0
OD1 A:ASN121 2.8 14.9 1.0
CB A:ALA110 3.2 14.5 1.0
CG A:ASN121 3.3 12.6 1.0
CG2 A:VAL112 3.3 14.7 1.0
ND2 A:ASN121 3.4 13.9 1.0
C3 A:CRO66 3.5 16.3 1.0
NE2 A:GLN94 3.6 14.9 1.0
CD A:GLN94 3.8 14.2 1.0
CA3 A:CRO66 3.8 15.7 1.0
CB A:GLN94 3.9 15.0 1.0
O A:THR63 4.1 13.1 1.0
CG A:GLN94 4.1 15.0 1.0
NA A:NA318 4.2 22.4 0.9
OE1 A:GLN94 4.2 16.3 1.0
CL A:CL312 4.6 24.0 0.6
CA A:ALA110 4.7 14.0 1.0
CB A:ASN121 4.7 14.6 1.0
CG1 A:ILE123 4.8 16.8 1.0
CB A:VAL112 4.8 13.8 1.0

Chlorine binding site 3 out of 18 in 6quh

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Chlorine binding site 3 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:22.2
occ:0.59
 CL A:CL308 2.7 20.1 0.6
CL A:CL312 2.9 24.0 0.6
O A:THR63 2.9 13.1 1.0
NE2 A:GLN94 3.2 14.9 1.0
C A:THR63 3.7 13.1 1.0
CA A:THR63 3.8 13.4 1.0
NH1 A:ARG96 3.8 15.7 1.0
NA A:NA316 3.9 20.7 1.0
CB A:ALA110 3.9 14.5 1.0
CD A:GLN94 4.0 14.2 1.0
CG A:GLN94 4.0 15.0 1.0
CG2 A:THR63 4.1 15.5 1.0
O A:THR62 4.2 13.1 1.0
CA3 A:CRO66 4.2 15.7 1.0
CB A:THR63 4.5 14.5 1.0
CB A:GLN94 4.5 15.0 1.0
ND2 A:ASN121 4.5 13.9 1.0
CG1 A:ILE123 4.6 16.8 1.0
OD1 A:ASN121 4.6 14.9 1.0
O3 A:CRO66 4.7 15.9 1.0
OG1 A:THR108 4.7 13.9 1.0
O A:GLN94 4.8 14.2 1.0
C3 A:CRO66 4.8 16.3 1.0
CZ A:ARG96 4.8 17.3 1.0
O2 A:CRO66 4.8 15.1 1.0
N A:THR63 4.9 13.5 1.0
C A:THR62 5.0 10.7 1.0
OE1 A:GLN94 5.0 16.3 1.0

Chlorine binding site 4 out of 18 in 6quh

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Chlorine binding site 4 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl310

b:26.0
occ:0.47
 N A:ALA37 2.7 17.4 1.0
O A:GLY10 2.7 17.9 1.0
O A:PHE8 2.9 20.2 1.0
O A:HOH404 3.0 47.1 1.0
CB A:ALA37 3.4 16.4 1.0
C A:PHE8 3.5 17.7 1.0
CA A:PHE8 3.5 16.5 1.0
CA A:ASP36 3.6 18.4 1.0
C A:ASP36 3.6 15.1 1.0
CA A:ALA37 3.6 15.3 1.0
CB A:PHE8 3.7 15.7 1.0
O A:GLY35 3.8 15.7 1.0
CD1 A:PHE8 3.9 15.8 1.0
C A:GLY10 3.9 19.3 1.0
CE1 A:PHE71 4.0 16.2 1.0
CD1 A:PHE71 4.0 16.1 1.0
CG2 A:VAL12 4.1 16.1 1.0
CG A:PHE8 4.3 15.0 1.0
N A:ASP36 4.3 17.8 1.0
C A:GLY35 4.3 15.1 1.0
N A:GLY10 4.4 21.8 1.0
OD1 A:ASP36 4.4 22.0 1.0
N A:THR38 4.4 16.8 0.5
N A:THR38 4.4 16.0 0.5
C A:ALA37 4.5 15.3 1.0
N A:THR9 4.6 16.5 1.0
CA A:GLY10 4.8 22.6 1.0
N A:VAL12 4.8 14.9 1.0
CB A:VAL12 4.8 15.6 1.0
O A:ASP36 4.8 17.4 1.0
CB A:ASP36 4.8 18.8 1.0
N A:VAL11 4.8 19.4 1.0
O A:HOH532 4.9 21.8 1.0
CA A:VAL11 4.9 15.3 1.0
C A:THR9 4.9 19.9 1.0
N A:PHE8 5.0 15.0 1.0

Chlorine binding site 5 out of 18 in 6quh

Go back to Chlorine Binding Sites List in 6quh
Chlorine binding site 5 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl311

b:22.5
occ:0.52
 O A:HOH467 2.6 27.2 1.0
N A:VAL68 2.8 17.0 1.0
C A:VAL68 3.1 13.8 1.0
C1 A:CRO66 3.1 12.4 1.0
O A:VAL68 3.2 14.3 1.0
N2 A:CRO66 3.4 15.0 1.0
N3 A:CRO66 3.4 12.1 1.0
CA A:VAL68 3.5 16.0 1.0
N A:GLN69 3.5 13.5 1.0
CG2 A:VAL68 3.5 15.9 1.0
CA1 A:CRO66 3.7 14.9 1.0
CD1 A:LEU42 3.7 27.9 1.0
C2 A:CRO66 3.7 12.3 1.0
CA2 A:CRO66 3.7 14.3 1.0
CB1 A:CRO66 3.8 15.1 1.0
CA A:GLN69 3.9 14.3 1.0
CG A:GLN69 4.0 17.5 1.0
CB A:VAL68 4.1 14.0 1.0
C3 A:CRO66 4.1 16.3 1.0
CA3 A:CRO66 4.1 15.7 1.0
OE1 A:GLU222 4.2 26.0 1.0
O2 A:CRO66 4.5 15.1 1.0
CB A:GLN69 4.6 16.0 1.0
OG1 A:CRO66 4.6 17.3 1.0
CB2 A:CRO66 4.6 14.4 1.0
CG1 A:CRO66 4.9 15.5 1.0
CG A:LEU42 4.9 21.4 1.0
CL A:CL313 4.9 38.5 0.4

Chlorine binding site 6 out of 18 in 6quh

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Chlorine binding site 6 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl312

b:24.0
occ:0.57
 OG1 A:THR108 2.6 13.9 1.0
O A:GLN94 2.8 14.2 1.0
CL A:CL309 2.9 22.2 0.6
CB A:THR108 3.3 13.1 1.0
C A:GLN94 3.6 15.4 1.0
NA A:NA316 3.7 20.7 1.0
C A:THR108 3.7 14.2 1.0
O A:THR108 3.7 15.6 1.0
CB A:ALA110 3.8 14.5 1.0
N A:ARG109 3.9 14.3 1.0
N A:ALA110 3.9 14.7 1.0
N A:ARG96 4.0 14.4 1.0
CA A:GLU95 4.0 15.4 1.0
CG A:GLN94 4.0 15.0 1.0
CA A:THR108 4.1 15.3 1.0
N A:GLU95 4.1 15.7 1.0
C A:ARG109 4.2 12.6 1.0
CA A:ARG109 4.2 15.1 1.0
C A:GLU95 4.2 13.0 1.0
CB A:GLN94 4.3 15.0 1.0
CG A:ARG96 4.4 16.0 1.0
CA A:ALA110 4.5 14.0 1.0
CG2 A:THR108 4.5 15.1 1.0
CB A:ARG96 4.6 15.3 1.0
CA A:GLN94 4.6 15.4 1.0
CL A:CL308 4.6 20.1 0.6
NE2 A:GLN94 4.7 14.9 1.0
CG2 A:ILE123 4.8 20.1 1.0
NH1 A:ARG96 4.8 15.7 1.0
CA A:ARG96 4.9 14.3 1.0
CG2 A:THR63 4.9 15.5 1.0
O A:ARG109 4.9 17.6 1.0
CD A:GLN94 4.9 14.2 1.0

Chlorine binding site 7 out of 18 in 6quh

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Chlorine binding site 7 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl313

b:38.5
occ:0.37
 OG1 A:THR203 2.9 20.5 1.0
NE2 A:GLN69 3.0 19.6 1.0
O A:HOH467 3.2 27.2 1.0
CB2 A:CRO66 3.7 14.4 1.0
CG2 A:CRO66 3.7 14.8 1.0
CD2 A:CRO66 3.7 14.9 1.0
CG A:GLN69 3.7 17.5 1.0
CG2 A:THR203 3.7 20.1 1.0
CD A:GLN69 3.8 16.8 1.0
CD1 A:LEU201 3.9 15.9 1.0
CG1 A:VAL224 3.9 19.7 1.0
CG2 A:VAL150 3.9 24.6 1.0
CB A:THR203 3.9 16.6 1.0
CB A:LEU201 4.2 16.3 1.0
CE2 A:CRO66 4.4 17.8 1.0
CD1 A:CRO66 4.4 14.4 1.0
CA2 A:CRO66 4.5 14.3 1.0
CG2 A:VAL224 4.6 16.9 1.0
CB A:VAL150 4.6 22.4 1.0
CG A:LEU201 4.7 16.2 1.0
CB A:GLN69 4.8 16.0 1.0
CB A:VAL224 4.9 17.6 1.0
OG A:SER72 4.9 18.3 1.0
CL A:CL311 4.9 22.5 0.5

Chlorine binding site 8 out of 18 in 6quh

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Chlorine binding site 8 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl314

b:28.6
occ:0.51
 O A:GLY40 2.8 18.3 1.0
O A:PHE71 3.0 18.6 1.0
C A:PHE71 3.3 15.1 1.0
C A:GLY40 3.4 19.1 1.0
CG A:LEU42 3.5 21.4 1.0
CG2 A:VAL224 3.5 16.9 1.0
CB A:PHE71 3.6 14.4 1.0
CB A:VAL224 3.6 17.6 1.0
N A:SER72 3.8 17.2 1.0
CA A:GLY40 3.9 20.0 1.0
N A:ARG41 4.0 13.8 1.0
CD2 A:LEU42 4.0 27.1 1.0
CA A:PHE71 4.1 14.7 1.0
CD1 A:LEU42 4.1 27.9 1.0
N A:VAL224 4.1 13.8 1.0
CA A:SER72 4.1 15.3 1.0
C A:ARG41 4.2 14.0 1.0
N A:LEU42 4.2 15.2 1.0
CA A:ARG41 4.4 15.1 1.0
CA A:VAL224 4.4 15.9 1.0
O A:VAL224 4.5 17.4 1.0
CB A:LEU42 4.5 22.2 1.0
O A:ARG41 4.6 18.2 1.0
O A:GLU222 4.7 15.5 1.0
CG1 A:VAL224 4.8 19.7 1.0
CA A:LEU42 4.9 17.1 1.0
CG A:PHE71 4.9 15.5 1.0
C A:PHE223 5.0 13.3 1.0
C A:VAL224 5.0 17.2 1.0
N A:PHE71 5.0 14.3 1.0

Chlorine binding site 9 out of 18 in 6quh

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Chlorine binding site 9 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl315

b:24.4
occ:0.33
 O A:VAL111 2.8 14.7 1.0
O A:VAL120 2.9 15.8 1.0
CG A:ARG122 3.5 15.2 1.0
C A:VAL120 3.5 14.2 1.0
C A:VAL111 3.5 12.9 1.0
CG A:ARG113 3.5 22.3 1.0
CB A:VAL120 3.7 16.3 1.0
CG1 A:VAL111 3.8 18.0 1.0
N A:ARG113 3.8 14.6 1.0
CG1 A:VAL120 3.8 19.1 1.0
N A:ARG122 3.9 13.0 1.0
CB A:ARG122 3.9 14.6 1.0
CD A:ARG122 4.0 15.8 1.0
CB A:VAL111 4.0 17.9 1.0
OE2 A:GLU115 4.1 19.9 1.0
O A:ARG113 4.1 15.9 1.0
N A:ASN121 4.2 14.2 1.0
N A:VAL112 4.2 13.5 1.0
CA A:VAL112 4.2 13.8 1.0
CA A:VAL120 4.2 14.7 1.0
NE A:ARG113 4.3 32.1 1.0
NE A:ARG122 4.3 15.5 1.0
C A:VAL112 4.4 13.2 1.0
CA A:ASN121 4.4 14.6 1.0
CA A:VAL111 4.4 14.0 1.0
C A:ASN121 4.4 14.4 1.0
CD A:ARG113 4.5 24.3 1.0
CB A:ARG113 4.5 16.6 1.0
CA A:ARG113 4.5 15.7 1.0
CA A:ARG122 4.6 14.5 1.0
C A:ARG113 4.7 15.2 1.0
CD A:GLU115 4.9 19.5 1.0
CG2 A:VAL120 4.9 19.3 1.0
N A:VAL120 4.9 14.4 1.0

Chlorine binding site 10 out of 18 in 6quh

Go back to Chlorine Binding Sites List in 6quh
Chlorine binding site 10 out of 18 in the Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Ghk Tagged Gfp Variant Crystal Form II at 1.34A Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl307

b:19.4
occ:0.58
 OG1 C:THR63 2.8 14.4 1.0
OG1 C:THR108 2.9 15.3 1.0
NH1 C:ARG96 2.9 14.8 1.0
CD C:ARG96 3.4 13.8 1.0
CA C:THR63 3.5 13.9 1.0
CG C:ARG96 3.5 13.9 1.0
CB C:THR63 3.5 15.0 1.0
CB C:ARG96 3.6 15.1 1.0
CD1 C:ILE98 3.6 16.0 1.0
CG2 C:THR108 3.6 16.8 1.0
NA C:NA317 3.7 24.1 1.0
CB C:THR108 3.7 16.9 1.0
CL C:CL309 3.8 20.6 0.6
CG2 C:THR63 3.9 15.1 1.0
CZ C:ARG96 3.9 14.7 1.0
N C:THR63 4.0 14.0 1.0
NE C:ARG96 4.1 14.2 1.0
O C:THR62 4.4 15.2 1.0
C C:THR62 4.4 13.0 1.0
CG1 C:ILE98 4.4 15.1 1.0
NA C:NA316 4.7 20.6 0.9
OG1 C:THR62 4.7 13.4 1.0
C C:THR63 4.7 13.7 1.0
CA C:ARG96 4.8 14.1 1.0
N C:ARG96 5.0 14.9 1.0
O C:THR63 5.0 13.3 1.0

Reference:

T.Huyton, D.Goerlich. Using the Copper Binding Peptide Ghk For Phasing Structures To Be Published.
Page generated: Mon Jul 29 14:09:22 2024

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