Chlorine in PDB 6qww: Hewl Lysozyme, Crystallized From CUCL2 Solution

Enzymatic activity of Hewl Lysozyme, Crystallized From CUCL2 Solution

All present enzymatic activity of Hewl Lysozyme, Crystallized From CUCL2 Solution:
3.2.1.17;

Protein crystallography data

The structure of Hewl Lysozyme, Crystallized From CUCL2 Solution, PDB code: 6qww was solved by A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.84 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.739, 78.739, 36.774, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 19

Other elements in 6qww:

The structure of Hewl Lysozyme, Crystallized From CUCL2 Solution also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hewl Lysozyme, Crystallized From CUCL2 Solution (pdb code 6qww). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Hewl Lysozyme, Crystallized From CUCL2 Solution, PDB code: 6qww:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6qww

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Chlorine binding site 1 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:18.5
occ:1.00
OG A:SER24 3.0 12.9 1.0
N A:GLY26 3.1 8.1 1.0
CB A:SER24 3.5 10.3 1.0
CA A:GLY26 3.5 8.3 1.0
CA A:GLN121 3.6 13.5 1.0
N A:GLN121 3.9 13.1 1.0
CB A:GLN121 4.1 17.0 1.0
N A:LEU25 4.2 8.7 1.0
CG2 A:VAL120 4.2 14.4 1.0
O A:VAL120 4.2 11.8 1.0
C A:VAL120 4.2 12.2 1.0
CD1 A:ILE124 4.2 24.6 1.0
CG A:GLN121 4.3 22.1 1.0
C A:LEU25 4.3 8.5 1.0
C A:SER24 4.4 8.7 1.0
CG1 A:ILE124 4.5 20.3 1.0
CA A:SER24 4.6 9.6 1.0
C A:GLY26 4.6 7.5 1.0
N A:ASN27 4.7 7.9 1.0
CA A:LEU25 4.7 8.2 1.0
O A:SER24 4.8 9.4 1.0
C A:GLN121 4.9 11.9 1.0
CB A:VAL120 5.0 12.8 1.0
CB A:LEU25 5.0 8.9 1.0

Chlorine binding site 2 out of 6 in 6qww

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Chlorine binding site 2 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:20.0
occ:1.00
O A:HOH423 3.0 24.6 1.0
N A:THR69 3.0 13.3 1.0
O A:THR69 3.1 16.9 1.0
O A:HOH358 3.2 15.1 1.0
N A:ARG68 3.5 12.9 1.0
C A:THR69 3.5 14.3 1.0
OG A:SER72 3.5 23.6 1.0
C A:GLY67 3.6 13.2 1.0
CA A:GLY67 3.7 14.6 1.0
CA A:THR69 3.7 12.8 1.0
OD1 A:ASN65 3.7 16.4 1.0
N A:GLY67 3.7 12.9 1.0
O A:HOH389 3.9 10.3 0.5
CB A:THR69 4.1 13.2 1.0
C A:ARG68 4.1 14.7 1.0
O A:GLY67 4.2 17.4 1.0
CA A:ARG68 4.2 12.4 1.0
O A:HOH341 4.2 18.6 0.5
OD1 A:ASP66 4.3 10.2 1.0
N A:PRO70 4.4 15.0 1.0
O A:HOH420 4.6 29.2 1.0
CU A:CU208 4.6 35.1 0.7
OG1 A:THR69 4.7 13.0 1.0
CL A:CL207 4.8 31.7 0.5
C A:ASP66 4.8 12.4 1.0
CB A:SER72 4.8 23.6 1.0
N A:ASP66 4.9 10.7 1.0
CG A:ASN65 4.9 17.3 1.0
CA A:PRO70 5.0 18.8 1.0

Chlorine binding site 3 out of 6 in 6qww

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Chlorine binding site 3 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:42.3
occ:1.00
O A:HOH328 3.1 26.3 1.0
N A:ILE88 3.6 12.4 1.0
O A:HOH421 3.7 18.6 1.0
CG1 A:ILE88 3.8 11.5 1.0
CZ A:PHE3 3.8 11.8 1.0
O A:SER86 3.9 19.2 0.5
O A:SER86 3.9 19.4 0.5
CG2 A:ILE88 4.0 12.6 1.0
CB A:ALA11 4.1 9.1 1.0
CA A:ASP87 4.1 15.0 1.0
CE1 A:HIS15 4.3 16.7 1.0
CB A:ILE88 4.3 11.4 1.0
CE2 A:PHE3 4.4 12.2 1.0
C A:ASP87 4.4 14.6 1.0
CA A:ILE88 4.5 11.3 1.0
CD1 A:ILE88 4.6 11.7 1.0
C A:SER86 4.8 16.3 0.5
O A:HOH350 4.8 30.3 1.0
C A:SER86 4.8 16.6 0.5
OD1 A:ASP87 4.9 17.4 1.0
N A:ASP87 4.9 14.1 1.0
CE1 A:PHE3 4.9 12.5 1.0

Chlorine binding site 4 out of 6 in 6qww

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Chlorine binding site 4 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:25.7
occ:1.00
NZ A:LYS33 3.6 22.8 1.0
CE2 A:PHE38 3.6 11.1 1.0
O A:HOH395 3.8 28.4 1.0
CZ3 A:TRP123 3.9 12.3 1.0
CE A:LYS33 4.0 18.5 1.0
CD A:LYS33 4.1 15.3 1.0
CD A:ARG5 4.1 15.2 1.0
CB A:ARG5 4.2 14.5 1.0
CZ A:PHE38 4.2 8.9 1.0
CD2 A:PHE38 4.6 11.0 1.0
CG A:ARG5 4.6 15.1 1.0
NE A:ARG5 4.6 14.8 1.0
CE3 A:TRP123 4.7 11.7 1.0
CH2 A:TRP123 4.8 14.6 1.0

Chlorine binding site 5 out of 6 in 6qww

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Chlorine binding site 5 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:13.3
occ:0.50
CU A:CU209 3.0 10.3 0.5
NZ A:LYS13 3.2 13.2 1.0
O A:LEU129 3.5 3.7 0.5
O A:HOH344 3.5 8.8 1.0
C A:LEU129 3.7 9.7 0.5
C A:LEU129 3.7 10.4 0.5
O A:LEU129 3.8 4.6 0.5
CE A:LYS13 3.9 13.3 1.0
CD A:LYS13 4.0 11.9 1.0
CB A:LEU129 4.0 12.1 1.0
CA A:LEU129 4.5 10.7 1.0
O A:HOH339 4.7 13.8 1.0
CG A:LYS13 4.8 10.2 1.0

Chlorine binding site 6 out of 6 in 6qww

Go back to Chlorine Binding Sites List in 6qww
Chlorine binding site 6 out of 6 in the Hewl Lysozyme, Crystallized From CUCL2 Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hewl Lysozyme, Crystallized From CUCL2 Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:31.7
occ:0.50
N A:GLY71 2.8 21.0 1.0
O A:HOH439 3.1 29.2 1.0
O A:HOH423 3.3 24.6 1.0
CA A:PRO70 3.6 18.8 1.0
C A:PRO70 3.7 21.8 1.0
CA A:GLY71 3.7 22.5 1.0
O A:THR69 4.2 16.9 1.0
N A:SER72 4.2 26.4 1.0
C A:GLY71 4.3 23.5 1.0
CB A:PRO70 4.6 24.6 1.0
N A:PRO70 4.6 15.0 1.0
C A:THR69 4.8 14.3 1.0
CL A:CL203 4.8 20.0 1.0
O A:PRO70 4.8 27.6 1.0
O A:SER72 4.9 33.8 1.0

Reference:

A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk. Hewl Lysozyme, Crystallized From Different Chlorides To Be Published.
Page generated: Sat Dec 12 13:34:46 2020

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