Chlorine in PDB 6qwz: Hewl Lysozyme, Crystallized From Kcl Solution

Enzymatic activity of Hewl Lysozyme, Crystallized From Kcl Solution

All present enzymatic activity of Hewl Lysozyme, Crystallized From Kcl Solution:
3.2.1.17;

Protein crystallography data

The structure of Hewl Lysozyme, Crystallized From Kcl Solution, PDB code: 6qwz was solved by A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.81 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.660, 78.660, 37.061, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hewl Lysozyme, Crystallized From Kcl Solution (pdb code 6qwz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Hewl Lysozyme, Crystallized From Kcl Solution, PDB code: 6qwz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 6qwz

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Chlorine binding site 1 out of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:13.8
occ:1.00
OH A:TYR23 3.0 11.0 1.0
CZ A:TYR23 3.7 9.1 1.0
CE2 A:TYR23 3.7 10.1 1.0
CA A:GLY104 4.2 9.8 1.0
O A:ARG21 4.6 13.1 1.0
N A:GLY104 4.8 9.2 1.0
CE1 A:TYR23 4.8 9.7 1.0
CD2 A:TYR23 4.9 10.5 1.0

Chlorine binding site 2 out of 5 in 6qwz

Go back to Chlorine Binding Sites List in 6qwz
Chlorine binding site 2 out of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:19.2
occ:1.00
OG A:SER24 3.1 15.8 1.0
N A:GLY26 3.1 10.0 1.0
CA A:GLY26 3.4 10.8 1.0
CB A:SER24 3.5 13.2 1.0
CA A:GLN121 3.6 15.6 1.0
N A:GLN121 3.9 14.9 1.0
CD1 A:ILE124 4.0 23.4 1.0
CB A:GLN121 4.0 19.4 1.0
C A:VAL120 4.2 15.2 1.0
O A:VAL120 4.2 13.2 1.0
CG A:GLN121 4.2 23.0 1.0
CG1 A:ILE124 4.2 18.0 1.0
CG2 A:VAL120 4.2 14.2 1.0
N A:LEU25 4.3 13.0 1.0
C A:LEU25 4.3 11.7 1.0
C A:SER24 4.4 12.6 1.0
C A:GLY26 4.5 9.7 1.0
N A:ASN27 4.6 9.8 1.0
CA A:SER24 4.6 12.3 1.0
CA A:LEU25 4.8 12.6 1.0
C A:GLN121 4.8 13.8 1.0
O A:SER24 4.9 12.8 1.0
CB A:VAL120 5.0 13.8 1.0

Chlorine binding site 3 out of 5 in 6qwz

Go back to Chlorine Binding Sites List in 6qwz
Chlorine binding site 3 out of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:21.0
occ:1.00
N A:THR69 3.1 14.1 1.0
O A:HOH410 3.1 31.4 1.0
O A:THR69 3.2 15.8 1.0
O A:HOH376 3.3 15.6 1.0
N A:ARG68 3.4 12.5 1.0
C A:GLY67 3.4 13.0 1.0
CA A:GLY67 3.6 11.5 1.0
C A:THR69 3.6 15.4 1.0
O A:HOH384 3.6 29.7 1.0
N A:GLY67 3.7 11.6 1.0
OG A:SER72 3.7 22.7 1.0
CA A:THR69 3.7 14.2 1.0
OD1 A:ASN65 3.8 15.9 1.0
O A:HOH387 4.0 21.3 1.0
C A:ARG68 4.0 14.5 1.0
O A:GLY67 4.1 16.7 1.0
CB A:THR69 4.1 11.4 1.0
CA A:ARG68 4.2 13.0 1.0
OD1 A:ASP66 4.3 9.8 1.0
N A:PRO70 4.3 19.1 1.0
O A:HOH305 4.7 9.9 1.0
C A:ASP66 4.7 11.9 1.0
OG1 A:THR69 4.8 11.4 1.0
O A:HOH374 4.8 18.1 0.5
CA A:PRO70 4.9 18.9 1.0
N A:ASP66 4.9 10.1 1.0
CG A:ASN65 5.0 15.0 1.0

Chlorine binding site 4 out of 5 in 6qwz

Go back to Chlorine Binding Sites List in 6qwz
Chlorine binding site 4 out of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:26.0
occ:1.00
O A:HOH323 3.2 26.6 1.0
N A:ILE88 3.2 13.2 1.0
O A:HOH412 3.5 29.4 1.0
CG1 A:ILE88 3.7 12.2 1.0
CA A:ASP87 3.7 14.7 1.0
CE1 A:HIS15 3.7 17.1 1.0
C A:ASP87 4.0 14.1 1.0
CG A:ASP87 4.0 21.1 1.0
OD1 A:ASP87 4.1 16.9 1.0
O A:SER86 4.1 16.9 1.0
CG2 A:ILE88 4.2 13.9 1.0
CB A:ALA11 4.2 12.0 1.0
CB A:ILE88 4.2 12.3 1.0
CA A:ILE88 4.3 11.9 1.0
OD2 A:ASP87 4.3 27.0 1.0
CZ A:PHE3 4.3 12.1 1.0
CB A:ASP87 4.4 17.3 1.0
NE2 A:HIS15 4.4 19.1 1.0
ND1 A:HIS15 4.5 15.1 1.0
CD1 A:ILE88 4.6 12.5 1.0
O A:HOH317 4.7 25.2 1.0
N A:ASP87 4.7 14.2 1.0
C A:SER86 4.8 17.1 1.0
CE2 A:PHE3 4.9 12.4 1.0

Chlorine binding site 5 out of 5 in 6qwz

Go back to Chlorine Binding Sites List in 6qwz
Chlorine binding site 5 out of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:27.1
occ:1.00
CE2 A:PHE38 3.6 11.8 1.0
CZ3 A:TRP123 3.9 14.0 1.0
NZ A:LYS33 4.0 19.8 1.0
CD A:ARG5 4.1 17.2 1.0
CB A:ARG5 4.2 15.7 1.0
CZ A:PHE38 4.3 10.8 1.0
CD A:LYS33 4.4 14.1 1.0
CE A:LYS33 4.4 16.1 1.0
CD2 A:PHE38 4.5 11.1 1.0
CG A:ARG5 4.5 15.9 1.0
NE A:ARG5 4.6 16.1 1.0
CE3 A:TRP123 4.7 13.9 1.0
CH2 A:TRP123 4.8 15.3 1.0

Reference:

A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk. Hewl Lysozyme, Crystallized From Different Chlorides To Be Published.
Page generated: Sat Dec 12 13:34:49 2020

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