Chlorine in PDB 6qwz: Hewl Lysozyme, Crystallized From Kcl Solution
Enzymatic activity of Hewl Lysozyme, Crystallized From Kcl Solution
All present enzymatic activity of Hewl Lysozyme, Crystallized From Kcl Solution:
3.2.1.17;
Protein crystallography data
The structure of Hewl Lysozyme, Crystallized From Kcl Solution, PDB code: 6qwz
was solved by
A.S.Boikova,
P.V.Dorovatovskii,
Y.A.Dyakova,
K.B.Ilina,
I.P.Kuranova,
V.A.Lazarenko,
M.A.Marchenkova,
Y.V.Pisarevsky,
V.I.Timofeev,
M.V.Kovalchuk,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.81 /
1.35
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.660,
78.660,
37.061,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.8 /
21.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Hewl Lysozyme, Crystallized From Kcl Solution
(pdb code 6qwz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Hewl Lysozyme, Crystallized From Kcl Solution, PDB code: 6qwz:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6qwz
Go back to
Chlorine Binding Sites List in 6qwz
Chlorine binding site 1 out
of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:13.8
occ:1.00
|
OH
|
A:TYR23
|
3.0
|
11.0
|
1.0
|
CZ
|
A:TYR23
|
3.7
|
9.1
|
1.0
|
CE2
|
A:TYR23
|
3.7
|
10.1
|
1.0
|
CA
|
A:GLY104
|
4.2
|
9.8
|
1.0
|
O
|
A:ARG21
|
4.6
|
13.1
|
1.0
|
N
|
A:GLY104
|
4.8
|
9.2
|
1.0
|
CE1
|
A:TYR23
|
4.8
|
9.7
|
1.0
|
CD2
|
A:TYR23
|
4.9
|
10.5
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6qwz
Go back to
Chlorine Binding Sites List in 6qwz
Chlorine binding site 2 out
of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:19.2
occ:1.00
|
OG
|
A:SER24
|
3.1
|
15.8
|
1.0
|
N
|
A:GLY26
|
3.1
|
10.0
|
1.0
|
CA
|
A:GLY26
|
3.4
|
10.8
|
1.0
|
CB
|
A:SER24
|
3.5
|
13.2
|
1.0
|
CA
|
A:GLN121
|
3.6
|
15.6
|
1.0
|
N
|
A:GLN121
|
3.9
|
14.9
|
1.0
|
CD1
|
A:ILE124
|
4.0
|
23.4
|
1.0
|
CB
|
A:GLN121
|
4.0
|
19.4
|
1.0
|
C
|
A:VAL120
|
4.2
|
15.2
|
1.0
|
O
|
A:VAL120
|
4.2
|
13.2
|
1.0
|
CG
|
A:GLN121
|
4.2
|
23.0
|
1.0
|
CG1
|
A:ILE124
|
4.2
|
18.0
|
1.0
|
CG2
|
A:VAL120
|
4.2
|
14.2
|
1.0
|
N
|
A:LEU25
|
4.3
|
13.0
|
1.0
|
C
|
A:LEU25
|
4.3
|
11.7
|
1.0
|
C
|
A:SER24
|
4.4
|
12.6
|
1.0
|
C
|
A:GLY26
|
4.5
|
9.7
|
1.0
|
N
|
A:ASN27
|
4.6
|
9.8
|
1.0
|
CA
|
A:SER24
|
4.6
|
12.3
|
1.0
|
CA
|
A:LEU25
|
4.8
|
12.6
|
1.0
|
C
|
A:GLN121
|
4.8
|
13.8
|
1.0
|
O
|
A:SER24
|
4.9
|
12.8
|
1.0
|
CB
|
A:VAL120
|
5.0
|
13.8
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6qwz
Go back to
Chlorine Binding Sites List in 6qwz
Chlorine binding site 3 out
of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:21.0
occ:1.00
|
N
|
A:THR69
|
3.1
|
14.1
|
1.0
|
O
|
A:HOH410
|
3.1
|
31.4
|
1.0
|
O
|
A:THR69
|
3.2
|
15.8
|
1.0
|
O
|
A:HOH376
|
3.3
|
15.6
|
1.0
|
N
|
A:ARG68
|
3.4
|
12.5
|
1.0
|
C
|
A:GLY67
|
3.4
|
13.0
|
1.0
|
CA
|
A:GLY67
|
3.6
|
11.5
|
1.0
|
C
|
A:THR69
|
3.6
|
15.4
|
1.0
|
O
|
A:HOH384
|
3.6
|
29.7
|
1.0
|
N
|
A:GLY67
|
3.7
|
11.6
|
1.0
|
OG
|
A:SER72
|
3.7
|
22.7
|
1.0
|
CA
|
A:THR69
|
3.7
|
14.2
|
1.0
|
OD1
|
A:ASN65
|
3.8
|
15.9
|
1.0
|
O
|
A:HOH387
|
4.0
|
21.3
|
1.0
|
C
|
A:ARG68
|
4.0
|
14.5
|
1.0
|
O
|
A:GLY67
|
4.1
|
16.7
|
1.0
|
CB
|
A:THR69
|
4.1
|
11.4
|
1.0
|
CA
|
A:ARG68
|
4.2
|
13.0
|
1.0
|
OD1
|
A:ASP66
|
4.3
|
9.8
|
1.0
|
N
|
A:PRO70
|
4.3
|
19.1
|
1.0
|
O
|
A:HOH305
|
4.7
|
9.9
|
1.0
|
C
|
A:ASP66
|
4.7
|
11.9
|
1.0
|
OG1
|
A:THR69
|
4.8
|
11.4
|
1.0
|
O
|
A:HOH374
|
4.8
|
18.1
|
0.5
|
CA
|
A:PRO70
|
4.9
|
18.9
|
1.0
|
N
|
A:ASP66
|
4.9
|
10.1
|
1.0
|
CG
|
A:ASN65
|
5.0
|
15.0
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6qwz
Go back to
Chlorine Binding Sites List in 6qwz
Chlorine binding site 4 out
of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:26.0
occ:1.00
|
O
|
A:HOH323
|
3.2
|
26.6
|
1.0
|
N
|
A:ILE88
|
3.2
|
13.2
|
1.0
|
O
|
A:HOH412
|
3.5
|
29.4
|
1.0
|
CG1
|
A:ILE88
|
3.7
|
12.2
|
1.0
|
CA
|
A:ASP87
|
3.7
|
14.7
|
1.0
|
CE1
|
A:HIS15
|
3.7
|
17.1
|
1.0
|
C
|
A:ASP87
|
4.0
|
14.1
|
1.0
|
CG
|
A:ASP87
|
4.0
|
21.1
|
1.0
|
OD1
|
A:ASP87
|
4.1
|
16.9
|
1.0
|
O
|
A:SER86
|
4.1
|
16.9
|
1.0
|
CG2
|
A:ILE88
|
4.2
|
13.9
|
1.0
|
CB
|
A:ALA11
|
4.2
|
12.0
|
1.0
|
CB
|
A:ILE88
|
4.2
|
12.3
|
1.0
|
CA
|
A:ILE88
|
4.3
|
11.9
|
1.0
|
OD2
|
A:ASP87
|
4.3
|
27.0
|
1.0
|
CZ
|
A:PHE3
|
4.3
|
12.1
|
1.0
|
CB
|
A:ASP87
|
4.4
|
17.3
|
1.0
|
NE2
|
A:HIS15
|
4.4
|
19.1
|
1.0
|
ND1
|
A:HIS15
|
4.5
|
15.1
|
1.0
|
CD1
|
A:ILE88
|
4.6
|
12.5
|
1.0
|
O
|
A:HOH317
|
4.7
|
25.2
|
1.0
|
N
|
A:ASP87
|
4.7
|
14.2
|
1.0
|
C
|
A:SER86
|
4.8
|
17.1
|
1.0
|
CE2
|
A:PHE3
|
4.9
|
12.4
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6qwz
Go back to
Chlorine Binding Sites List in 6qwz
Chlorine binding site 5 out
of 5 in the Hewl Lysozyme, Crystallized From Kcl Solution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Hewl Lysozyme, Crystallized From Kcl Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:27.1
occ:1.00
|
CE2
|
A:PHE38
|
3.6
|
11.8
|
1.0
|
CZ3
|
A:TRP123
|
3.9
|
14.0
|
1.0
|
NZ
|
A:LYS33
|
4.0
|
19.8
|
1.0
|
CD
|
A:ARG5
|
4.1
|
17.2
|
1.0
|
CB
|
A:ARG5
|
4.2
|
15.7
|
1.0
|
CZ
|
A:PHE38
|
4.3
|
10.8
|
1.0
|
CD
|
A:LYS33
|
4.4
|
14.1
|
1.0
|
CE
|
A:LYS33
|
4.4
|
16.1
|
1.0
|
CD2
|
A:PHE38
|
4.5
|
11.1
|
1.0
|
CG
|
A:ARG5
|
4.5
|
15.9
|
1.0
|
NE
|
A:ARG5
|
4.6
|
16.1
|
1.0
|
CE3
|
A:TRP123
|
4.7
|
13.9
|
1.0
|
CH2
|
A:TRP123
|
4.8
|
15.3
|
1.0
|
|
Reference:
A.S.Boikova,
P.V.Dorovatovskii,
Y.A.Dyakova,
K.B.Ilina,
I.P.Kuranova,
V.A.Lazarenko,
M.A.Marchenkova,
Y.V.Pisarevsky,
V.I.Timofeev,
M.V.Kovalchuk.
Hewl Lysozyme, Crystallized From Different Chlorides To Be Published.
Page generated: Mon Jul 29 14:10:51 2024
|