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Chlorine in PDB 6qx0: Hewl Lysozyme, Crystallized From Licl Solution

Enzymatic activity of Hewl Lysozyme, Crystallized From Licl Solution

All present enzymatic activity of Hewl Lysozyme, Crystallized From Licl Solution:
3.2.1.17;

Protein crystallography data

The structure of Hewl Lysozyme, Crystallized From Licl Solution, PDB code: 6qx0 was solved by A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.85 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.776, 78.776, 37.071, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hewl Lysozyme, Crystallized From Licl Solution (pdb code 6qx0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Hewl Lysozyme, Crystallized From Licl Solution, PDB code: 6qx0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6qx0

Go back to Chlorine Binding Sites List in 6qx0
Chlorine binding site 1 out of 3 in the Hewl Lysozyme, Crystallized From Licl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hewl Lysozyme, Crystallized From Licl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.6
occ:1.00
OG A:SER24 3.0 13.5 1.0
N A:GLY26 3.1 10.1 1.0
CA A:GLY26 3.5 10.6 1.0
CB A:SER24 3.5 11.3 1.0
CA A:GLN121 3.7 16.1 1.0
OE1 A:GLN121 3.8 41.8 1.0
CD1 A:ILE124 3.9 20.9 1.0
N A:GLN121 3.9 13.8 1.0
CG1 A:ILE124 4.2 16.2 1.0
CB A:GLN121 4.2 20.6 1.0
O A:VAL120 4.2 13.4 1.0
C A:VAL120 4.2 13.4 1.0
CG2 A:VAL120 4.3 10.9 1.0
N A:LEU25 4.3 11.3 1.0
C A:LEU25 4.4 10.9 1.0
C A:SER24 4.4 11.3 1.0
C A:GLY26 4.5 9.2 1.0
CA A:SER24 4.6 10.8 1.0
N A:ASN27 4.6 9.2 1.0
O A:HOH404 4.8 26.9 1.0
CA A:LEU25 4.8 10.7 1.0
CD A:GLN121 4.8 31.4 1.0
C A:GLN121 4.8 13.6 1.0
O A:SER24 4.9 11.4 1.0
CB A:VAL120 5.0 11.6 1.0

Chlorine binding site 2 out of 3 in 6qx0

Go back to Chlorine Binding Sites List in 6qx0
Chlorine binding site 2 out of 3 in the Hewl Lysozyme, Crystallized From Licl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hewl Lysozyme, Crystallized From Licl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:19.1
occ:1.00
N A:THR69 3.1 12.5 1.0
O A:THR69 3.2 13.9 1.0
O A:HOH372 3.2 12.0 1.0
O A:HOH420 3.3 26.8 1.0
N A:ARG68 3.4 11.2 1.0
C A:GLY67 3.4 11.5 1.0
CA A:GLY67 3.5 11.5 1.0
C A:THR69 3.6 13.0 1.0
N A:GLY67 3.6 10.8 1.0
OD1 A:ASN65 3.7 13.5 1.0
OG A:SER72 3.7 22.3 1.0
CA A:THR69 3.8 12.8 1.0
O A:HOH400 3.9 16.7 1.0
C A:ARG68 4.0 14.1 1.0
O A:GLY67 4.1 15.7 1.0
CB A:THR69 4.1 10.1 1.0
CA A:ARG68 4.1 11.6 1.0
OD1 A:ASP66 4.2 9.2 1.0
N A:PRO70 4.4 16.7 1.0
C A:ASP66 4.7 10.2 1.0
OG1 A:THR69 4.7 9.9 1.0
N A:ASP66 4.9 9.2 1.0
CG A:ASN65 4.9 14.2 1.0
O A:HOH366 4.9 15.3 0.5
CA A:PRO70 5.0 17.8 1.0
CB A:SER72 5.0 21.8 1.0

Chlorine binding site 3 out of 3 in 6qx0

Go back to Chlorine Binding Sites List in 6qx0
Chlorine binding site 3 out of 3 in the Hewl Lysozyme, Crystallized From Licl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hewl Lysozyme, Crystallized From Licl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:22.6
occ:1.00
CE2 A:PHE38 3.7 10.4 1.0
NZ A:LYS33 3.7 18.1 1.0
CZ3 A:TRP123 3.9 12.0 1.0
CD A:ARG5 4.1 15.3 1.0
CE A:LYS33 4.2 15.6 1.0
O A:HOH355 4.2 37.6 1.0
CB A:ARG5 4.2 14.1 1.0
CD A:LYS33 4.3 12.9 1.0
CZ A:PHE38 4.3 9.8 1.0
CD2 A:PHE38 4.6 9.8 1.0
CG A:ARG5 4.6 14.6 1.0
CE3 A:TRP123 4.6 12.8 1.0
NE A:ARG5 4.7 14.2 1.0
CH2 A:TRP123 4.8 14.8 1.0

Reference:

A.S.Boikova, P.V.Dorovatovskii, Y.A.Dyakova, K.B.Ilina, I.P.Kuranova, V.A.Lazarenko, M.A.Marchenkova, Y.V.Pisarevsky, V.I.Timofeev, M.V.Kovalchuk. Hewl Lysozyme, Crystallized From Different Chlorides To Be Published.
Page generated: Mon Jul 29 14:10:53 2024

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