Chlorine in PDB 6r1o: Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative

Enzymatic activity of Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative

All present enzymatic activity of Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative:
6.1.1.11;

Protein crystallography data

The structure of Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative, PDB code: 6r1o was solved by R.Salimraj, R.Cain, D.I.Roper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.96 / 2.60
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.410, 85.410, 317.716, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 21.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative (pdb code 6r1o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative, PDB code: 6r1o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6r1o

Go back to Chlorine Binding Sites List in 6r1o
Chlorine binding site 1 out of 2 in the Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:93.1
occ:1.00
O A:HOH700 3.1 72.3 1.0
NH2 A:ARG373 3.1 67.3 1.0
O A:HOH717 3.3 78.4 1.0
O A:HOH699 3.7 69.0 1.0
NH1 A:ARG373 3.7 65.0 1.0
CZ A:ARG373 3.9 85.8 1.0
CG A:LEU384 4.6 52.4 1.0
CD1 A:LEU384 4.6 52.1 1.0

Chlorine binding site 2 out of 2 in 6r1o

Go back to Chlorine Binding Sites List in 6r1o
Chlorine binding site 2 out of 2 in the Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of E. Coli Seryl-Trna Synthetase Complexed to A Seryl Sulfamoyl Adenosine Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:0.6
occ:1.00
NH1 A:ARG221 3.0 0.9 1.0
NH2 A:ARG221 3.8 0.6 1.0
CZ A:ARG221 3.8 0.6 1.0

Reference:

R.Cain, R.Salimraj, A.S.Punekar, D.Bellini, C.W.G.Fishwick, L.Czaplewski, D.J.Scott, G.Harris, C.G.Dowson, A.J.Lloyd, D.I.Roper. Structure-Guided Enhancement of Selectivity of Chemical Probe Inhibitors Targeting Bacterial Seryl-Trna Synthetase. J.Med.Chem. V. 62 9703 2019.
ISSN: ISSN 0022-2623
PubMed: 31626547
DOI: 10.1021/ACS.JMEDCHEM.9B01131
Page generated: Sat Dec 12 13:35:22 2020

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