Chlorine in PDB 6rcc: Domain C P140 Mycoplasma Genitalium

Protein crystallography data

The structure of Domain C P140 Mycoplasma Genitalium, PDB code: 6rcc was solved by D.Vizarraga, D.Aparicio, R.Perez, R.Illanes, I.Fita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.04 / 1.43
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.090, 90.090, 58.030, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 19.9

Other elements in 6rcc:

The structure of Domain C P140 Mycoplasma Genitalium also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Domain C P140 Mycoplasma Genitalium (pdb code 6rcc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Domain C P140 Mycoplasma Genitalium, PDB code: 6rcc:

Chlorine binding site 1 out of 1 in 6rcc

Go back to Chlorine Binding Sites List in 6rcc
Chlorine binding site 1 out of 1 in the Domain C P140 Mycoplasma Genitalium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Domain C P140 Mycoplasma Genitalium within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl202

b:21.7
occ:1.00
OG1 X:THR51 3.0 23.8 1.0
O X:HOH409 3.1 50.2 1.0
NE2 X:GLN93 3.2 17.8 1.0
O X:HOH412 3.3 42.4 1.0
N X:THR51 3.5 16.5 1.0
CB X:PRO49 3.5 20.4 1.0
CG2 X:THR51 3.5 21.2 1.0
N X:VAL50 3.7 15.5 1.0
CB X:THR51 3.8 19.4 1.0
CG2 X:VAL90 4.0 20.6 1.0
CG1 X:VAL90 4.1 21.6 1.0
C X:PRO49 4.1 19.1 1.0
CG2 X:VAL50 4.1 19.5 1.0
OE1 X:GLN93 4.1 18.4 1.0
CD X:GLN93 4.1 18.6 1.0
CA X:PRO49 4.1 17.1 1.0
CA X:THR51 4.3 16.7 1.0
CB X:VAL90 4.4 21.1 1.0
CA X:VAL90 4.4 17.9 1.0
C X:VAL50 4.5 17.1 1.0
CA X:VAL50 4.5 15.7 1.0
O X:PRO49 4.9 17.7 1.0
CG X:PRO49 4.9 25.8 1.0
CB X:VAL50 4.9 19.0 1.0

Reference:

D.Vizarraga, R.Perez-Luque, J.Martin, I.Fita, D.Aparicio. Alternative Conformation of the C-Domain of the P140 Protein From Mycoplasma Genitalium. Acta Crystallogr.,Sect.F V. 76 508 2020.
ISSN: ESSN 2053-230X
PubMed: 33135669
DOI: 10.1107/S2053230X20012297
Page generated: Sat Dec 12 13:36:00 2020

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