Chlorine in PDB 6rgw: Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide

The structure of Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide, PDB code: 6rgw was solved by J.Houser, E.Fujdiarova, G.Jancarikova, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.48 / 1.75
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	80.893, 80.893, 113.642, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 21

The structure of Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Chlorine atom in the Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide (pdb code 6rgw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide, PDB code: 6rgw:

Chlorine binding site 1 out of 1 in the Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Photorhabdus Asymbiotica Lectin Phl in Complex with O-Methylated Pgl- 1-Derived Disaccharide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl412 b:49.9 occ:1.00 OG1 A:THR26 3.1 50.1 1.0 O A:HOH658 3.1 37.8 1.0 NH2 A:ARG240 3.2 33.7 1.0 O A:THR222 3.5 31.5 1.0 C A:ILE27 3.5 34.2 1.0 CA A:ILE27 3.6 36.7 1.0 N A:ILE27 3.7 38.7 1.0 O A:THR26 3.7 39.0 1.0 C A:THR26 3.7 42.1 1.0 N A:ALA28 3.7 34.6 1.0 O A:HOH622 3.9 39.9 1.0 O A:ILE27 3.9 35.4 1.0 O A:HOH509 4.0 47.1 1.0 CB A:THR26 4.1 47.4 1.0 CB A:THR222 4.3 32.4 1.0 C A:THR222 4.4 31.6 1.0 CZ A:ARG240 4.5 31.9 1.0 CA A:THR222 4.5 32.0 1.0 CA A:ALA28 4.5 33.3 1.0 CA A:THR26 4.6 44.2 1.0

E.Fujdiarova, J.Houser, P.Dobes, G.Paulikova, N.Kondakov, L.Kononov, P.Hyrsl, M.Wimmerova. Heptabladed Beta-Propeller Lectins PLL2 and Phl From Photorhabdus Spp. Recognize O-Methylated Sugars and Influence the Host Immune System. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 32559333
DOI: 10.1111/FEBS.15457