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Chlorine in PDB 6rnb: Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time

Enzymatic activity of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time

All present enzymatic activity of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time:
3.2.1.17;

Protein crystallography data

The structure of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time, PDB code: 6rnb was solved by P.Mehrabi, E.C.Schulz, R.J.D.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.65 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.700, 78.700, 37.900, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 18.6

Other elements in 6rnb:

The structure of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time (pdb code 6rnb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time, PDB code: 6rnb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6rnb

Go back to Chlorine Binding Sites List in 6rnb
Chlorine binding site 1 out of 2 in the Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:34.1
occ:1.00
 OH A:TYR23 2.9 23.4 1.0
O A:HOH339 3.5 31.0 1.0
CZ A:TYR23 3.6 22.3 1.0
CE2 A:TYR23 3.7 19.7 1.0
CA A:GLY104 4.0 23.0 1.0
O A:HOH327 4.4 41.2 1.0
N A:GLY104 4.7 22.7 1.0
O A:ARG21 4.7 26.3 1.0
CE1 A:TYR23 4.8 24.4 1.0
CD2 A:TYR23 4.9 18.5 1.0

Chlorine binding site 2 out of 2 in 6rnb

Go back to Chlorine Binding Sites List in 6rnb
Chlorine binding site 2 out of 2 in the Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:92.4
occ:1.00
 CD1 A:ILE124 3.4 40.2 1.0
OD1 A:ASP18 3.5 38.5 1.0
N A:LEU25 3.8 23.7 1.0
CB A:SER24 3.9 25.1 1.0
CB A:LEU25 4.1 28.4 1.0
CG A:ASP18 4.3 46.6 1.0
OD2 A:ASP18 4.4 48.4 1.0
CA A:LEU25 4.5 23.1 1.0
CA A:SER24 4.5 24.7 1.0
C A:SER24 4.6 27.2 1.0
N A:GLY26 4.6 22.9 1.0
OG A:SER24 4.6 27.6 1.0
CG1 A:ILE124 4.8 31.6 1.0

Reference:

P.Mehrabi, E.C.Schulz, M.Agthe, S.Horrell, G.Bourenkov, D.Von Stetten, J.P.Leimkohl, H.Schikora, T.R.Schneider, A.R.Pearson, F.Tellkamp, R.J.D.Miller. Liquid Application Method For Time-Resolved Analyses By Serial Synchrotron Crystallography. Nat.Methods V. 16 979 2019.
ISSN: ESSN 1548-7105
PubMed: 31527838
DOI: 10.1038/S41592-019-0553-1
Page generated: Mon Jul 29 14:36:10 2024

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