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Chlorine in PDB 6rt1: Native Tetragonal Lysozyme - Home Source Data

Enzymatic activity of Native Tetragonal Lysozyme - Home Source Data

All present enzymatic activity of Native Tetragonal Lysozyme - Home Source Data:
3.2.1.17;

Protein crystallography data

The structure of Native Tetragonal Lysozyme - Home Source Data, PDB code: 6rt1 was solved by P.J.B.Pereira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.60 / 1.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.634, 78.634, 36.993, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 16.2

Other elements in 6rt1:

The structure of Native Tetragonal Lysozyme - Home Source Data also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Native Tetragonal Lysozyme - Home Source Data (pdb code 6rt1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Native Tetragonal Lysozyme - Home Source Data, PDB code: 6rt1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 6rt1

Go back to Chlorine Binding Sites List in 6rt1
Chlorine binding site 1 out of 5 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:13.5
occ:1.00
 OH A:TYR23 3.0 9.2 1.0
O A:HOH364 3.2 13.6 1.0
CZ A:TYR23 3.7 7.9 1.0
CE2 A:TYR23 3.7 8.5 1.0
CA A:GLY104 4.2 10.0 1.0
O A:ARG21 4.6 11.4 1.0
N A:GLY104 4.7 10.2 1.0
CE1 A:TYR23 4.9 7.8 1.0
CD2 A:TYR23 4.9 7.5 1.0

Chlorine binding site 2 out of 5 in 6rt1

Go back to Chlorine Binding Sites List in 6rt1
Chlorine binding site 2 out of 5 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:15.6
occ:1.00
 O A:HOH387 3.1 11.1 1.0
O A:HOH430 3.1 31.6 1.0
N A:THR69 3.1 10.2 1.0
O A:THR69 3.3 12.0 1.0
N A:ARG68 3.5 10.6 0.6
N A:ARG68 3.5 10.6 0.4
C A:GLY67 3.5 10.8 1.0
O A:HOH365 3.5 30.5 1.0
CA A:GLY67 3.6 10.9 1.0
C A:THR69 3.6 10.4 1.0
N A:GLY67 3.7 9.7 1.0
OG A:SER72 3.7 14.0 1.0
OD1 A:ASN65 3.7 12.8 1.0
CA A:THR69 3.8 9.7 1.0
O A:HOH410 4.0 14.7 1.0
O A:GLY67 4.1 13.7 1.0
C A:ARG68 4.1 13.1 0.6
CB A:THR69 4.2 9.2 1.0
C A:ARG68 4.2 12.5 0.4
CA A:ARG68 4.2 11.2 0.6
OD1 A:ASP66 4.2 8.1 1.0
CA A:ARG68 4.3 10.9 0.4
N A:PRO70 4.5 11.6 1.0
NA A:NA209 4.7 13.1 1.0
C A:ASP66 4.8 8.4 1.0
OG1 A:THR69 4.8 9.6 1.0
O A:HOH381 4.8 20.1 0.5
N A:ASP66 4.9 7.7 1.0
CB A:SER72 5.0 14.8 1.0
CG A:ASN65 5.0 12.5 1.0

Chlorine binding site 3 out of 5 in 6rt1

Go back to Chlorine Binding Sites List in 6rt1
Chlorine binding site 3 out of 5 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:16.6
occ:1.00
 O A:HOH437 2.9 35.3 1.0
OG A:SER24 3.0 13.5 1.0
N A:GLY26 3.1 8.0 1.0
CB A:SER24 3.5 12.1 1.0
CA A:GLY26 3.5 8.8 1.0
CA A:GLN121 3.6 14.3 1.0
CD1 A:ILE124 3.8 18.4 1.0
N A:GLN121 3.9 13.0 1.0
CB A:GLN121 3.9 19.3 1.0
N A:LEU25 4.1 9.0 1.0
CG1 A:ILE124 4.2 15.1 1.0
CG A:GLN121 4.2 25.1 1.0
C A:VAL120 4.2 11.5 1.0
O A:VAL120 4.2 11.1 1.0
CG2 A:VAL120 4.3 12.8 1.0
C A:SER24 4.3 9.0 1.0
C A:LEU25 4.3 8.5 1.0
C A:GLY26 4.5 7.6 1.0
CA A:SER24 4.5 9.1 1.0
N A:ASN27 4.6 6.8 1.0
CA A:LEU25 4.7 8.7 1.0
O A:SER24 4.7 9.0 1.0
C A:GLN121 4.8 12.1 1.0
O A:HOH435 4.9 30.7 1.0
CB A:LEU25 5.0 9.4 1.0

Chlorine binding site 4 out of 5 in 6rt1

Go back to Chlorine Binding Sites List in 6rt1
Chlorine binding site 4 out of 5 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:22.2
occ:1.00
 O A:HOH474 3.1 27.9 0.6
O A:HOH452 3.1 38.3 1.0
O A:HOH424 3.2 19.6 1.0
ND2 A:ASN65 3.2 15.0 1.0
O A:HOH450 3.2 35.7 1.0
CB A:PRO79 3.7 9.9 1.0
CA A:PRO79 3.7 8.7 1.0
CB A:ASN65 3.8 10.4 1.0
N A:PRO79 3.9 9.9 1.0
CG A:ASN65 4.0 12.5 1.0
CD A:PRO79 4.3 12.2 1.0
O A:ASN65 4.3 8.4 1.0
CG A:PRO79 4.4 13.0 1.0
C A:ILE78 4.5 10.4 1.0
O A:ILE78 4.7 10.2 1.0
ND2 A:ASN74 4.8 12.9 1.0
CA A:ASN65 4.9 9.1 1.0
C A:ASN65 4.9 7.3 1.0

Chlorine binding site 5 out of 5 in 6rt1

Go back to Chlorine Binding Sites List in 6rt1
Chlorine binding site 5 out of 5 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:21.6
occ:0.79
 NZ A:LYS33 3.5 17.8 1.0
O A:HOH379 3.6 36.6 1.0
CE2 A:PHE38 3.7 9.4 1.0
CZ3 A:TRP123 3.9 13.2 1.0
CE A:LYS33 4.0 15.5 1.0
CD A:LYS33 4.2 13.1 1.0
CD A:ARG5 4.2 13.2 1.0
O A:HOH395 4.2 29.4 1.0
CB A:ARG5 4.3 11.8 1.0
CZ A:PHE38 4.3 9.0 1.0
O A:HOH405 4.4 35.0 1.0
CD2 A:PHE38 4.6 8.6 1.0
CG A:ARG5 4.6 12.7 1.0
CE3 A:TRP123 4.7 11.4 1.0
CH2 A:TRP123 4.7 14.2 1.0
NE A:ARG5 4.8 13.5 1.0

Reference:

P.J.B.Pereira, P.J.B.Pereira. N/A N/A.
Page generated: Mon Jul 29 14:38:33 2024

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