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Chlorine in PDB 6rvm: Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form

Protein crystallography data

The structure of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form, PDB code: 6rvm was solved by C.Fernandez-Tornero, J.M.Andreu, A.J.Canosa-Valls, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.16 / 2.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.564, 78.805, 225.639, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 25.6

Other elements in 6rvm:

The structure of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form (pdb code 6rvm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form, PDB code: 6rvm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 6rvm

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Chlorine binding site 1 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:94.8
occ:1.00
 OD2 A:ASP159 3.1 68.0 1.0
O A:HOH509 3.2 59.5 1.0
HD12 A:LEU127 3.4 96.1 1.0
HA A:LEU127 3.6 80.2 1.0
OD1 A:ASP159 3.8 72.7 1.0
CG A:ASP159 3.8 73.6 1.0
HG3 A:LYS122 3.9 95.8 1.0
CD1 A:LEU127 4.3 80.1 1.0
O A:ALA126 4.3 70.4 1.0
HD13 A:LEU127 4.4 96.1 1.0
HA2 A:GLY125 4.4 97.7 1.0
CA A:LEU127 4.4 66.9 1.0
N A:LEU127 4.5 74.1 1.0
C A:ALA126 4.5 69.2 1.0
HE2 A:LYS122 4.6 98.8 1.0
HG2 A:LYS122 4.7 95.8 1.0
HA A:LYS122 4.7 87.9 1.0
CG A:LYS122 4.7 79.8 1.0
H A:THR128 4.8 69.6 1.0
HD11 A:LEU127 4.8 96.1 1.0
O3 A:SO4401 4.9 66.6 1.0
H A:LEU127 4.9 88.9 1.0
OD1 A:ASP187 5.0 60.6 1.0
O1 A:SO4401 5.0 88.1 1.0

Chlorine binding site 2 out of 9 in 6rvm

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Chlorine binding site 2 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:76.8
occ:1.00
 HD22 A:ASN299 2.5 74.5 1.0
O A:HOH518 2.7 66.6 1.0
OE2 A:GLU181 2.9 67.4 1.0
HG11 A:VAL297 3.2 59.1 1.0
ND2 A:ASN299 3.2 62.0 1.0
HD21 A:ASN299 3.4 74.5 1.0
HG21 B:ILE293 3.5 63.8 1.0
O A:HOH510 3.6 50.1 1.0
HB2 A:ASN299 3.7 67.9 1.0
HD13 B:ILE293 3.9 71.2 1.0
CD A:GLU181 4.0 66.8 1.0
CG1 A:VAL297 4.0 49.2 1.0
HG12 A:VAL297 4.0 59.1 1.0
HG23 B:ILE293 4.2 63.8 1.0
CG A:ASN299 4.2 57.1 1.0
CG2 B:ILE293 4.2 53.1 1.0
HG21 A:THR265 4.3 58.8 1.0
OE1 A:GLU181 4.4 63.0 1.0
CB A:ASN299 4.4 56.5 1.0
HG13 A:VAL297 4.5 59.1 1.0
HG22 B:ILE293 4.6 63.8 1.0
HZ3 A:LYS184 4.6 96.0 1.0
HZ2 A:LYS184 4.7 96.0 1.0
HG21 A:VAL297 4.7 53.9 1.0
HB3 A:ASN299 4.8 67.9 1.0
CD1 B:ILE293 4.8 59.3 1.0

Chlorine binding site 3 out of 9 in 6rvm

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Chlorine binding site 3 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:0.9
occ:1.00
 HD22 A:ASN166 2.4 99.5 1.0
HB3 A:ASN166 2.8 89.2 1.0
ND2 A:ASN166 3.2 82.9 1.0
CB A:ASN166 3.6 74.4 1.0
HD21 A:ASN166 3.8 99.5 1.0
HB2 A:ASN166 3.8 89.2 1.0
CG A:ASN166 3.9 67.4 1.0
HE2 A:MET105 4.2 96.3 1.0
HE1 A:MET105 4.4 96.3 1.0
CE A:MET105 4.8 80.3 1.0
HB3 A:ASP167 4.8 92.0 1.0
H A:ASP167 4.8 79.4 1.0
H A:ASN166 4.8 79.0 1.0
CA A:ASN166 4.8 64.1 1.0
N A:ASP167 5.0 66.2 1.0

Chlorine binding site 4 out of 9 in 6rvm

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Chlorine binding site 4 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl404

b:91.2
occ:1.00
 HB2 C:ARG191 2.7 64.3 1.0
O1 C:SO4402 3.2 84.5 1.0
HH11 C:ARG191 3.3 67.4 1.0
HA C:ARG191 3.6 57.3 1.0
CB C:ARG191 3.6 53.6 1.0
OD1 C:ASP187 3.6 54.5 1.0
HD3 C:ARG191 3.7 74.1 1.0
NH1 C:ARG191 3.8 56.2 1.0
O2 C:SO4402 4.0 82.3 1.0
S C:SO4402 4.0 96.5 1.0
HH12 C:ARG191 4.0 67.4 1.0
CA C:ARG191 4.0 47.7 1.0
O3 C:SO4402 4.1 0.5 1.0
HG3 C:ARG191 4.2 73.5 1.0
HB3 C:ARG191 4.2 64.3 1.0
H C:ARG191 4.3 60.1 1.0
CG C:ARG191 4.3 61.2 1.0
CG C:ASP187 4.4 56.2 1.0
N C:ARG191 4.4 50.1 1.0
CD C:ARG191 4.4 61.8 1.0
O C:ASP187 4.4 51.0 1.0
O C:HOH505 4.5 65.7 1.0
OD2 C:ASP187 4.5 60.0 1.0
CZ C:ARG191 4.7 64.6 1.0
NE C:ARG191 4.9 64.7 1.0
OD1 C:ASP159 4.9 62.5 1.0
HB2 C:LEU190 5.0 57.0 1.0

Chlorine binding site 5 out of 9 in 6rvm

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Chlorine binding site 5 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl405

b:0.3
occ:1.00
 OE2 C:GLU185 2.9 62.9 1.0
HD22 C:ASN263 3.2 65.9 1.0
HA3 C:GLY295 3.4 56.3 1.0
O C:HOH501 3.5 58.4 1.0
HG22 D:VAL297 3.6 51.3 1.0
HB2 C:ASN263 3.7 55.3 1.0
ND2 C:ASN263 3.8 54.9 1.0
CD C:GLU185 4.0 57.6 1.0
HD21 C:ASN263 4.1 65.9 1.0
HG21 D:VAL297 4.3 51.3 1.0
CA C:GLY295 4.3 46.9 1.0
OE1 C:GLU185 4.3 62.9 1.0
HG22 C:ILE293 4.4 57.4 1.0
HG13 D:VAL297 4.4 49.0 1.0
CG2 D:VAL297 4.4 42.7 1.0
HG11 D:VAL297 4.4 49.0 1.0
CG C:ASN263 4.4 49.5 1.0
CB C:ASN263 4.5 46.0 1.0
N C:GLY295 4.6 47.6 1.0
H C:GLY295 4.6 57.1 1.0
HG21 C:ILE293 4.7 57.4 1.0
HA2 C:GLY295 4.7 56.3 1.0
CG1 D:VAL297 4.8 40.9 1.0
O C:MET262 4.8 45.8 1.0
HA C:ASN263 4.9 65.3 1.0

Chlorine binding site 6 out of 9 in 6rvm

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Chlorine binding site 6 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl406

b:0.1
occ:1.00
 HD22 C:ASN220 2.1 0.3 1.0
H C:ASN220 2.4 78.4 1.0
ND2 C:ASN220 3.0 97.7 1.0
OG C:SER219 3.2 78.4 1.0
HA C:SER219 3.2 75.3 1.0
N C:ASN220 3.2 65.3 1.0
HB2 C:ASN220 3.3 84.7 1.0
HD21 C:ASN220 3.4 0.3 1.0
HG C:SER219 3.5 94.0 1.0
CA C:SER219 3.8 62.8 1.0
H C:GLN221 3.9 74.3 1.0
CB C:ASN220 3.9 70.6 1.0
CG C:ASN220 3.9 86.1 1.0
CB C:SER219 4.0 62.2 1.0
C C:SER219 4.0 66.0 1.0
CA C:ASN220 4.1 66.7 1.0
HB2 C:SER219 4.2 74.6 1.0
N C:GLN221 4.6 62.0 1.0
HB3 C:SER219 4.8 74.6 1.0
HB3 C:ASN220 4.8 84.7 1.0
C C:ASN220 4.9 61.8 1.0
HA C:ASN220 4.9 80.0 1.0

Chlorine binding site 7 out of 9 in 6rvm

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Chlorine binding site 7 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:85.4
occ:1.00
 H D:THR109 2.2 75.4 1.0
HG23 D:THR109 2.7 78.9 1.0
HA3 D:GLY108 2.8 80.3 1.0
N D:THR109 3.0 62.9 1.0
HB3 D:ALA73 3.4 0.5 1.0
CA D:GLY108 3.5 67.0 1.0
OG1 D:THR109 3.5 58.9 1.0
HA2 D:GLY108 3.5 80.3 1.0
CG2 D:THR109 3.6 65.7 1.0
MG D:MG406 3.6 72.9 1.0
C D:GLY108 3.7 65.8 1.0
HG1 D:THR109 3.8 70.7 1.0
CB D:THR109 3.9 64.7 1.0
HG22 D:THR109 4.1 78.9 1.0
CA D:THR109 4.1 64.4 1.0
HG21 D:THR109 4.2 78.9 1.0
CB D:ALA73 4.3 87.9 1.0
H D:GLY110 4.4 75.2 1.0
HG1 D:THR45 4.4 75.6 1.0
HB1 D:ALA73 4.5 0.5 1.0
HA D:THR109 4.6 77.2 1.0
O D:GLY107 4.6 67.1 1.0
HB2 D:ALA73 4.7 0.5 1.0
N D:GLY108 4.8 79.8 1.0
OG1 D:THR45 4.8 63.0 1.0
O D:ALA73 4.8 83.9 1.0
HB D:THR109 4.9 77.6 1.0
O D:GLY108 4.9 69.8 1.0

Chlorine binding site 8 out of 9 in 6rvm

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Chlorine binding site 8 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl404

b:0.8
occ:1.00
 OE2 D:GLU185 3.1 68.4 1.0
HB2 D:ASN263 3.3 54.9 1.0
HD22 D:ASN263 3.4 63.2 1.0
OE1 D:GLU185 3.6 57.3 1.0
CD D:GLU185 3.7 63.6 1.0
HA3 D:GLY295 4.1 47.4 1.0
ND2 D:ASN263 4.1 52.6 1.0
CB D:ASN263 4.2 45.7 1.0
O D:MET262 4.2 48.1 1.0
HG22 D:ILE293 4.2 57.8 1.0
HB3 D:LEU261 4.3 55.2 1.0
CG D:ASN263 4.6 52.6 1.0
HD21 D:ASN263 4.6 63.2 1.0
HA D:ASN263 4.8 59.7 1.0
H D:GLY295 4.8 51.4 1.0
HB3 D:ASN263 4.8 54.9 1.0
C D:MET262 4.8 45.2 1.0
HG21 D:ILE293 4.8 57.8 1.0
HG22 C:VAL297 4.9 52.1 1.0
CA D:GLY295 5.0 39.5 1.0
CA D:ASN263 5.0 49.8 1.0
CG2 D:ILE293 5.0 48.1 1.0

Chlorine binding site 9 out of 9 in 6rvm

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Chlorine binding site 9 out of 9 in the Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cell Division Protein Ftsz From Staphylococcus Aureus, Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl405

b:76.5
occ:1.00
 H D:GLY22 2.3 68.6 1.0
O D:SER103 2.8 64.8 1.0
HB2 D:SER103 3.1 60.8 1.0
N D:GLY22 3.1 57.2 1.0
HA3 D:GLY22 3.1 73.6 1.0
O D:GLY107 3.3 67.1 1.0
MG D:MG406 3.3 72.9 1.0
HA3 D:GLY20 3.4 61.5 1.0
HA3 D:GLY110 3.5 69.4 1.0
CA D:GLY22 3.6 61.3 1.0
H D:GLY21 3.6 71.7 1.0
H D:GLY23 3.7 66.1 1.0
O D:GLY106 3.7 88.6 1.0
O D:MET105 3.7 73.5 1.0
N D:GLY21 3.8 59.7 1.0
C D:SER103 3.8 62.9 1.0
CB D:SER103 4.0 50.7 1.0
HA2 D:GLY107 4.0 97.7 1.0
C D:GLY106 4.0 87.9 1.0
O D:VAL19 4.0 49.9 1.0
C D:GLY107 4.1 75.9 1.0
C D:GLY20 4.2 58.0 1.0
C D:GLY21 4.2 62.5 1.0
H D:GLY110 4.2 75.2 1.0
CA D:GLY20 4.2 51.2 1.0
HA D:SER103 4.2 69.9 1.0
N D:GLY23 4.3 55.1 1.0
N D:GLY107 4.3 84.6 1.0
CA D:SER103 4.3 58.2 1.0
HA2 D:GLY22 4.3 73.6 1.0
CA D:GLY107 4.3 81.4 1.0
CA D:GLY110 4.4 57.8 1.0
C D:GLY22 4.4 60.6 1.0
CA D:GLY21 4.5 54.2 1.0
H D:THR111 4.5 69.1 1.0
HA3 D:GLY106 4.5 0.0 1.0
HB3 D:SER103 4.6 60.8 1.0
OG D:SER103 4.6 51.5 1.0
HA3 D:GLY21 4.6 65.0 1.0
O D:GLY104 4.6 80.8 1.0
C D:MET105 4.6 72.9 1.0
N D:GLY110 4.7 62.7 1.0
HG D:SER103 4.7 61.9 1.0
CA D:GLY106 4.8 88.3 1.0
H D:GLY107 4.8 0.6 1.0
N D:THR111 4.8 57.6 1.0
HA2 D:GLY20 4.8 61.5 1.0
C D:GLY110 4.8 60.2 1.0
C D:GLY104 4.9 78.7 1.0
O D:GLY20 4.9 53.9 1.0
C D:VAL19 5.0 52.3 1.0
N D:GLY104 5.0 64.1 1.0

Reference:

S.Huecas, A.J.Canosa-Valls, L.Araujo-Bazan, F.M.Ruiz, D.V.Laurents, C.Fernandez-Tornero, J.M.Andreu. Nucleotide-Induced Folding of Cell Division Protein Ftsz From Staphylococcus Aureus. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 31997533
DOI: 10.1111/FEBS.15235
Page generated: Mon Jul 29 14:41:16 2024

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