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Chlorine in PDB 6rx1: Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation

Protein crystallography data

The structure of Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation, PDB code: 6rx1 was solved by K.Ruigrok, M.Backovic, M.C.Vaney, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 50.416, 50.416, 260.199, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 24.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation (pdb code 6rx1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation, PDB code: 6rx1:

Chlorine binding site 1 out of 1 in 6rx1

Go back to Chlorine Binding Sites List in 6rx1
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Syncytin 1 in Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:42.3
occ:0.33
ND2 A:ASN382 3.3 40.1 1.0
CB A:ASN382 3.9 40.6 1.0
CG1 A:VAL379 3.9 39.2 1.0
CG A:ASN382 4.1 48.9 1.0
CA A:VAL379 4.1 37.7 1.0
CG2 A:VAL379 4.2 38.6 1.0
CB A:VAL379 4.3 39.8 1.0
O A:VAL379 4.6 42.6 1.0
C A:VAL379 4.9 43.0 1.0

Reference:

K.Ruigrok, M.C.Vaney, J.Buchrieser, E.Baquero, J.Hellert, B.Baron, P.England, O.Schwartz, F.A.Rey, M.Backovic. X-Ray Structures of the Post-Fusion 6-Helix Bundle of the Human Syncytins and Their Functional Implications. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31711961
DOI: 10.1016/J.JMB.2019.10.020
Page generated: Mon Jul 29 14:42:20 2024

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