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Chlorine in PDB 6rzh: Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative

Protein crystallography data

The structure of Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative, PDB code: 6rzh was solved by R.Kumar, K.Peterson, U.J.Nilsson, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.29 / 0.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.159, 57.880, 62.456, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 14.4

Other elements in 6rzh:

The structure of Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative (pdb code 6rzh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative, PDB code: 6rzh:

Chlorine binding site 1 out of 1 in 6rzh

Go back to Chlorine Binding Sites List in 6rzh
Chlorine binding site 1 out of 1 in the Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Galectin-3C in Complex with Para-Fluoroaryltriazole Galactopyranosyl 1-Thio-D-Glucopyranoside Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:23.0
occ:1.00
O A:HOH495 2.7 33.0 1.0
HD21 A:ASN160 2.8 11.5 1.0
HG2 A:ARG162 3.1 12.8 1.0
H161 A:KOQ301 3.1 13.4 1.0
H191 A:KOQ301 3.2 13.4 1.0
O A:HOH581 3.2 29.9 0.6
HE A:ARG162 3.3 13.1 1.0
OD1 A:ASN160 3.5 11.0 1.0
HD2 A:ARG144 3.5 18.1 1.0
HB2 A:ARG144 3.5 13.6 1.0
ND2 A:ASN160 3.6 9.6 1.0
NE A:ARG162 3.6 10.9 1.0
C19 A:KOQ301 3.8 11.2 1.0
HB3 A:ARG144 3.8 13.6 1.0
HD3 A:ARG162 3.9 13.4 1.0
C16 A:KOQ301 3.9 11.1 1.0
CG A:ASN160 4.0 9.3 1.0
CG A:ARG162 4.0 10.7 1.0
H261 A:KOQ301 4.0 14.3 1.0
CD A:ARG162 4.1 11.1 1.0
CB A:ARG144 4.1 11.3 1.0
HH21 A:ARG162 4.2 13.4 1.0
CZ A:ARG162 4.2 10.7 1.0
HD3 A:ARG144 4.2 18.1 1.0
HH11 A:ARG144 4.3 26.9 1.0
HD22 A:ASN160 4.3 11.5 1.0
CD A:ARG144 4.3 15.1 1.0
H201 A:KOQ301 4.4 13.8 1.0
HG3 A:ARG162 4.4 12.8 1.0
C20 A:KOQ301 4.5 11.5 1.0
NH2 A:ARG162 4.5 11.2 1.0
C18 A:KOQ301 4.5 11.1 1.0
C17 A:KOQ301 4.5 11.7 1.0
H271 A:KOQ301 4.7 17.4 1.0
O A:HOH508 4.8 34.0 1.0
O A:HOH581 4.8 28.9 0.4
CG A:ARG144 4.8 12.4 1.0
O13 A:KOQ301 4.8 9.8 1.0
C26 A:KOQ301 4.9 11.9 1.0
HB3 A:ARG162 4.9 12.8 1.0
O A:HOH500 5.0 30.7 1.0
N15 A:KOQ301 5.0 11.6 1.0
HA A:ARG162 5.0 11.6 1.0

Reference:

J.Wallerstein, R.Kumar, M.M.Ignjatovic, M.Olsson, K.Peterson, H.Leffler, U.J.Nilsson, D.T.Logan, U.Ryde, M.Akke. Effects of Variable Fluorine Interactions on Conformational Entropy and Solvation Entropy in Protein Ligand Binding To Be Published.
Page generated: Mon Jul 29 14:44:28 2024

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