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Chlorine in PDB 6s0r: The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride

Enzymatic activity of The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride

All present enzymatic activity of The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride:
1.14.11.37;

Protein crystallography data

The structure of The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride, PDB code: 6s0r was solved by B.Mrugala, P.J.Porebski, E.Niedzialkowska, M.T.Cymborowski, W.Minor, T.Borowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.368, 184.213, 110.148, 90.00, 94.23, 90.00
R / Rfree (%) 17 / 20.8

Other elements in 6s0r:

The structure of The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride also contains other interesting chemical elements:

Nickel (Ni) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride (pdb code 6s0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride, PDB code: 6s0r:

Chlorine binding site 1 out of 1 in 6s0r

Go back to Chlorine Binding Sites List in 6s0r
Chlorine binding site 1 out of 1 in the The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus Complex with Nickel, Sulfate and Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:41.7
occ:1.00
 N B:ALA189 3.3 38.2 1.0
CD B:PRO188 3.6 36.3 1.0
CB B:ALA189 3.6 41.5 1.0
CG B:LEU187 3.7 39.3 1.0
CB B:PRO188 3.8 36.9 1.0
CD2 B:LEU187 3.9 41.1 1.0
N B:PRO188 4.0 35.0 1.0
CA B:ALA189 4.0 39.8 1.0
CG B:PRO188 4.1 36.6 1.0
C B:PRO188 4.2 36.0 1.0
CA B:PRO188 4.2 35.2 1.0
CD1 B:LEU187 4.5 40.3 1.0
C B:LEU187 4.7 34.6 1.0
CB B:LEU187 4.8 36.4 1.0

Reference:

B.Mrugala, A.Milaczewska, P.J.Porebski, E.Niedzialkowska, M.Guzik, W.Minor, T.Borowski. A Study on the Structure, Mechanism, and Biochemistry of Kanamycin B Dioxygenase (Kanj)-An Enzyme with A Broad Range of Substrates. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 32592631
DOI: 10.1111/FEBS.15462
Page generated: Mon Jul 29 14:45:58 2024

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