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Chlorine in PDB 6sbj: X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed

Enzymatic activity of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed

All present enzymatic activity of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed:
3.7.1.5; 4.1.1.112;

Protein crystallography data

The structure of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed, PDB code: 6sbj was solved by B.Rupp, A.Naschberger, A.K.H.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.65 / 2.22
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.401, 69.959, 107.557, 90.00, 92.25, 90.00
R / Rfree (%) 19.3 / 25.7

Other elements in 6sbj:

The structure of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed (pdb code 6sbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed, PDB code: 6sbj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 1 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:17.7
occ:1.00
 N A:ASN70 3.3 23.0 1.0
N A:ARG69 3.3 26.8 0.5
N A:ARG69 3.3 27.5 0.5
CB A:ALA108 3.5 16.9 1.0
C A:ALA108 3.5 16.5 1.0
CA A:ALA108 3.5 16.6 1.0
N A:ASP110 3.5 17.4 1.0
SG A:CYS68 3.6 36.8 1.0
N A:VAL111 3.6 15.3 1.0
CG2 A:VAL111 3.6 14.8 1.0
N A:ARG109 3.7 17.7 0.5
N A:ARG109 3.7 16.5 0.5
O A:ASN70 3.8 20.4 1.0
CB A:ASP110 3.8 19.2 1.0
C A:ASN70 3.9 23.1 1.0
O A:ALA108 4.0 15.8 1.0
CA A:CYS68 4.0 27.7 1.0
CA A:ASN70 4.0 20.7 1.0
CA A:ASP110 4.1 17.5 1.0
C A:CYS68 4.1 26.9 1.0
CB A:ASN70 4.1 20.8 1.0
CA A:ARG69 4.2 27.2 0.5
CA A:ARG69 4.2 28.4 0.5
C A:ARG69 4.2 25.1 0.5
C A:ARG69 4.2 25.7 0.5
CB A:VAL111 4.3 14.8 1.0
CD A:ARG69 4.3 28.3 0.5
C A:ASP110 4.4 16.0 1.0
CB A:CYS68 4.4 27.9 1.0
C A:ARG109 4.5 18.8 0.5
C A:ARG109 4.5 17.5 0.5
NE A:ARG69 4.5 26.4 0.5
CB A:ARG69 4.5 28.8 0.5
CB A:ARG69 4.5 30.9 0.5
CG A:ASP110 4.6 20.1 1.0
CA A:VAL111 4.6 15.2 1.0
CA A:ARG109 4.7 18.9 0.5
CA A:ARG109 4.7 16.8 0.5
N A:LEU71 4.7 22.2 1.0
CG A:ARG69 4.7 32.8 0.5
CG A:ARG69 4.8 29.5 0.5
N A:ALA108 5.0 16.4 1.0
OD2 A:ASP110 5.0 25.5 1.0
CZ A:ARG69 5.0 27.3 0.5

Chlorine binding site 2 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 2 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:19.4
occ:1.00
 O A:HOH419 3.2 4.7 1.0
N A:TRP122 3.3 16.2 1.0
N B:TRP122 3.3 11.5 1.0
CB B:PRO121 3.5 12.5 1.0
CB A:PRO121 3.5 18.4 1.0
CA A:PRO121 3.6 17.8 1.0
CA B:PRO121 3.6 12.2 1.0
C A:PRO121 3.9 16.2 1.0
C B:PRO121 4.0 11.8 1.0
CA A:TRP122 4.3 17.9 1.0
CB A:TRP122 4.3 21.6 1.0
CA B:TRP122 4.4 11.4 1.0
OG1 B:THR123 4.4 12.4 1.0
OG1 A:THR123 4.4 13.1 1.0
CB B:TRP122 4.4 11.3 1.0
N A:THR123 4.5 14.4 1.0
N B:THR123 4.5 11.3 1.0
CG A:PRO121 4.7 18.7 1.0
C A:TRP122 4.7 15.1 1.0
C B:TRP122 4.8 11.3 1.0
CG B:PRO121 4.8 12.8 1.0
N A:PRO121 4.9 18.9 1.0
CG A:TRP122 4.9 24.5 1.0
CB A:PHE48 5.0 16.7 1.0

Chlorine binding site 3 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 3 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:15.8
occ:1.00
 N B:ASP110 3.3 13.6 1.0
N B:ASN70 3.4 21.3 1.0
N B:ARG69 3.4 19.8 1.0
C B:ALA108 3.4 12.8 1.0
CA B:ALA108 3.6 12.7 1.0
CB B:ALA108 3.6 12.6 1.0
N B:ARG109 3.6 13.1 1.0
SG B:CYS68 3.6 20.2 1.0
CB B:ASP110 3.7 15.4 1.0
N B:VAL111 3.7 12.5 1.0
O B:ASN70 3.7 18.5 1.0
CA B:ASP110 3.9 14.3 1.0
O B:ALA108 3.9 12.4 1.0
CG2 B:VAL111 3.9 11.8 1.0
CA B:CYS68 4.0 18.3 1.0
CA B:ASN70 4.0 19.5 1.0
C B:ASN70 4.0 18.4 1.0
CB B:ASN70 4.0 19.6 1.0
C B:CYS68 4.1 17.9 1.0
C B:ARG109 4.2 14.1 1.0
C B:ASP110 4.3 13.4 1.0
CA B:ARG69 4.3 22.8 1.0
C B:ARG69 4.3 21.7 1.0
CB B:CYS68 4.4 19.6 1.0
CG B:ASP110 4.4 16.3 1.0
CA B:ARG109 4.5 13.4 1.0
CB B:VAL111 4.6 11.7 1.0
CB B:ARG69 4.7 24.3 1.0
CA B:VAL111 4.7 12.4 1.0
N B:LEU71 4.8 17.2 1.0
OD2 B:ASP110 4.8 16.7 1.0
O B:TYR67 4.9 14.5 1.0
OD1 B:ASP110 4.9 16.1 1.0

Chlorine binding site 4 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 4 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:19.4
occ:1.00
 N D:TRP122 3.2 22.2 1.0
N C:TRP122 3.3 26.4 1.0
CB D:PRO121 3.7 26.6 1.0
CA D:PRO121 3.7 27.1 1.0
CA C:PRO121 3.7 30.7 1.0
CB C:PRO121 3.9 31.6 1.0
C D:PRO121 3.9 24.5 1.0
C C:PRO121 4.0 27.1 1.0
CB D:TRP122 4.2 21.3 1.0
CA D:TRP122 4.2 19.6 1.0
CB C:TRP122 4.2 24.6 1.0
CA C:TRP122 4.2 25.0 1.0
OG1 C:THR123 4.5 25.3 1.0
OG1 D:THR123 4.5 16.6 1.0
N D:THR123 4.5 18.1 1.0
N C:THR123 4.6 26.9 1.0
C D:TRP122 4.7 18.4 1.0
CG C:TRP122 4.7 25.4 1.0
CG D:TRP122 4.7 22.7 1.0
C C:TRP122 4.8 23.4 1.0
CD1 C:TRP122 4.9 27.1 1.0
CD1 D:TRP122 5.0 24.3 1.0

Chlorine binding site 5 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 5 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl303

b:53.1
occ:1.00
 N C:VAL111 3.4 42.7 1.0
N C:ASP110 3.4 44.6 1.0
CG2 C:VAL111 3.4 37.1 1.0
CB C:ALA108 3.5 36.5 1.0
C C:ALA108 3.5 39.9 1.0
N C:ARG69 3.5 69.9 1.0
CA C:ALA108 3.6 38.0 1.0
N C:ASN70 3.6 63.4 1.0
N C:ARG109 3.8 39.2 1.0
CB C:ASP110 3.8 49.5 1.0
O C:ALA108 3.8 35.3 1.0
CA C:ASP110 3.9 45.9 1.0
SG C:CYS68 4.0 68.4 1.0
CG C:ARG69 4.0 83.0 1.0
CB C:VAL111 4.1 39.2 1.0
CA C:CYS68 4.1 68.6 1.0
C C:ASP110 4.1 43.0 1.0
O C:ASN70 4.1 57.5 1.0
C C:CYS68 4.3 63.3 1.0
CA C:ASN70 4.3 59.0 1.0
CA C:VAL111 4.3 42.2 1.0
C C:ARG109 4.3 40.5 1.0
C C:ASN70 4.4 53.0 1.0
CB C:ASN70 4.4 57.7 1.0
CA C:ARG69 4.4 70.5 1.0
C C:ARG69 4.5 62.5 1.0
CG C:ASP110 4.5 55.6 1.0
CB C:ARG69 4.5 74.9 1.0
CB C:CYS68 4.6 67.2 1.0
CA C:ARG109 4.7 39.4 1.0
O C:TYR67 4.9 56.8 1.0
OD2 C:ASP110 4.9 56.2 1.0

Chlorine binding site 6 out of 6 in 6sbj

Go back to Chlorine Binding Sites List in 6sbj
Chlorine binding site 6 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:35.1
occ:1.00
 N D:ASN70 3.3 46.7 1.0
N D:ARG69 3.3 45.9 1.0
N D:ASP110 3.5 32.9 1.0
CB D:ALA108 3.6 24.2 1.0
SG D:CYS68 3.6 39.8 1.0
C D:ALA108 3.6 25.9 1.0
CA D:ALA108 3.7 24.4 1.0
CB D:ASP110 3.7 36.7 1.0
N D:VAL111 3.7 34.5 1.0
CG2 D:VAL111 3.8 28.2 1.0
N D:ARG109 3.8 31.8 1.0
CA D:CYS68 3.9 40.7 1.0
O D:ASN70 3.9 45.2 1.0
CA D:ASN70 4.0 43.6 1.0
C D:ASN70 4.0 43.3 1.0
C D:CYS68 4.0 41.4 1.0
CA D:ASP110 4.0 33.7 1.0
O D:ALA108 4.1 27.5 1.0
CB D:ASN70 4.1 38.7 1.0
CA D:ARG69 4.2 51.2 1.0
C D:ARG69 4.2 49.0 1.0
CB D:CYS68 4.3 40.7 1.0
C D:ASP110 4.4 33.4 1.0
CB D:VAL111 4.4 31.4 1.0
CG D:ASP110 4.5 43.1 1.0
C D:ARG109 4.5 36.0 1.0
CB D:ARG69 4.5 56.7 1.0
CA D:VAL111 4.7 31.6 1.0
CA D:ARG109 4.8 36.0 1.0
N D:LEU71 4.8 38.1 1.0
O D:TYR67 4.8 31.5 1.0
OD2 D:ASP110 4.9 44.5 1.0

Reference:

A.K.H.Weiss, A.Naschberger, E.Cappuccio, C.Metzger, L.Mottes, M.Holzknecht, J.Von Velsen, M.W.Bowler, B.Rupp, P.Jansen-Durr. Structural and Functional Comparison of Fumarylacetoacetate Domain Containing Protein 1 (FAHD1) in Human and Mouse. Biosci.Rep. 2020.
ISSN: ISSN 0144-8463
PubMed: 32068790
DOI: 10.1042/BSR20194431
Page generated: Mon Jul 29 14:52:46 2024

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