Chlorine in PDB 6set: X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1

Enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1

All present enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1, PDB code: 6set was solved by G.Ferraro, A.Giorgio, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.86 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.448, 77.448, 37.316, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 21.5

Other elements in 6set:

The structure of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1 also contains other interesting chemical elements:

Gold (Au) 5 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1 (pdb code 6set). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1, PDB code: 6set:

Chlorine binding site 1 out of 1 in 6set

Go back to Chlorine Binding Sites List in 6set
Chlorine binding site 1 out of 1 in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:54.0
occ:1.00
 O A:CYS76 3.3 26.4 1.0
O A:HOH428 3.3 49.5 1.0
O A:ASN77 3.4 29.6 1.0
CG2 A:ILE78 3.7 36.7 1.0
O A:HOH437 3.9 20.9 0.5
O A:HOH377 4.0 23.2 0.5
C A:ASN77 4.2 30.4 1.0
C A:CYS76 4.4 25.6 1.0
CB A:ASN77 4.6 37.9 1.0
O A:HOH347 4.7 32.3 1.0
CA A:ASN77 4.8 30.5 1.0
CB A:ILE78 5.0 31.6 1.0
N A:ILE78 5.0 28.4 1.0

Reference:

G.Ferraro, A.Giorgio, A.M.Mansour, A.Merlino. Protein-Mediated Disproportionation of Au(I): Insights From the Structures of Adducts of Au(III) Compounds Bearing N,N-Pyridylbenzimidazole Derivatives with Lysozyme. Dalton Trans V. 48 14027 2019.
ISSN: ESSN 1477-9234
PubMed: 31490509
DOI: 10.1039/C9DT02729G
Page generated: Sat Dec 12 13:39:48 2020

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