Chlorine in PDB 6syc: Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5

Enzymatic activity of Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5

All present enzymatic activity of Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5, PDB code: 6syc was solved by A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.39 / 1.38
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	37.719, 76.559, 84.076, 90.00, 90.00, 90.00
*R / R_free (%)*	19.1 / 22.6

Other elements in 6syc:

The structure of Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5 also contains other interesting chemical elements:

Bromine	(Br)	32 atoms
Sodium	(Na)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5 (pdb code 6syc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5, PDB code: 6syc:

Chlorine binding site 1 out of 1 in 6syc

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Chlorine Binding Sites List in 6syc

Chlorine binding site 1 out of 1 in the Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Lysozyme in Presence of Bromophenol Blue at pH 6.5 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl202 b:19.1 occ:1.00	HE2	B:HIS15	2.4	13.9	1.0
	H	B:ILE88	2.6	13.1	1.0
	HG12	B:ILE88	2.8	16.6	1.0
	HA	B:ASP87	2.9	18.1	1.0
	O	B:HOH350	3.1	27.3	1.0
	HB1	B:ALA11	3.1	14.8	1.0
	NE2	B:HIS15	3.2	11.6	1.0
	HH21	B:ARG14	3.3	18.2	1.0
	N	B:ILE88	3.4	10.9	1.0
	OD1	B:ASP87	3.6	21.7	1.0
	CG1	B:ILE88	3.7	13.8	1.0
	HD2	B:HIS15	3.8	14.6	1.0
	O	B:HOH312	3.8	38.0	1.0
	CA	B:ASP87	3.8	15.1	1.0
	HG13	B:ILE88	3.9	16.6	1.0
	CD2	B:HIS15	3.9	12.2	1.0
	HG23	B:ILE88	3.9	15.3	1.0
	HB2	B:ALA11	3.9	14.8	1.0
	CB	B:ALA11	3.9	12.4	1.0
	NH2	B:ARG14	4.0	15.2	1.0
	HZ	B:PHE3	4.0	17.5	1.0
	C	B:ASP87	4.1	13.6	1.0
	HH22	B:ARG14	4.1	18.2	1.0
	CG	B:ASP87	4.1	20.3	1.0
	O	B:SER86	4.3	18.2	1.0
	CE1	B:HIS15	4.3	11.6	1.0
	HG1	B:THR89	4.3	17.9	1.0
	H	B:THR89	4.4	13.0	1.0
	CA	B:ILE88	4.4	11.6	1.0
	CB	B:ILE88	4.4	12.3	1.0
	HB3	B:ALA11	4.5	14.8	1.0
	CB	B:ASP87	4.5	17.6	1.0
	HE1	B:HIS15	4.5	14.0	1.0
	HE2	B:PHE3	4.5	17.5	1.0
	CG2	B:ILE88	4.6	12.8	1.0
	O	B:HOH328	4.6	19.0	1.0
	CD1	B:ILE88	4.6	12.6	1.0
	HD11	B:ILE88	4.7	15.1	1.0
	HD13	B:ILE88	4.7	15.1	1.0
	HB2	B:ASP87	4.7	21.1	1.0
	HA	B:ALA11	4.8	12.8	1.0
	O	B:HOH327	4.8	26.4	1.0
	O	B:HOH386	4.8	27.1	1.0
	CZ	B:PHE3	4.8	14.6	1.0
	N	B:THR89	4.8	10.8	1.0
	HE	B:ARG14	4.8	18.4	1.0
	N	B:ASP87	4.9	15.4	1.0
	OD2	B:ASP87	4.9	23.5	1.0
	CA	B:ALA11	4.9	10.7	1.0

Reference:

M.Plaza-Garrido, M.C.Salinas-Garcia, D.Alba-Elena, J.C.Martinez, A.Camara-Artigas. Lysozyme Crystals Dyed with Bromophenol Blue: Where Has the Dye Gone? Acta Crystallogr D Struct V. 76 845 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32876060
DOI: 10.1107/S2059798320008803

Page generated: Mon Jul 29 15:11:13 2024

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