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Chlorine in PDB 6t5s: Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin

Enzymatic activity of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin

All present enzymatic activity of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin:
3.2.1.17;

Protein crystallography data

The structure of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin, PDB code: 6t5s was solved by E.J.Taylor, M.Skjot, L.K.Skov, M.Klausen, L.De Maria, G.P.Gippert, J.P.Turkenburg, G.J.Davies, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.06 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.973, 54.895, 65.319, 90.00, 90.00, 90.00
R / Rfree (%) 11.6 / 16.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin (pdb code 6t5s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin, PDB code: 6t5s:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6t5s

Go back to Chlorine Binding Sites List in 6t5s
Chlorine binding site 1 out of 4 in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:20.8
occ:1.00
 H A:LEU104 2.3 12.3 1.0
O A:HOH481 2.6 38.0 1.0
HA3 A:GLY103 2.9 14.1 1.0
O A:HOH381 2.9 16.3 1.0
O A:HOH370 3.0 12.8 1.0
HG21 A:THR23 3.1 11.3 1.0
N A:LEU104 3.2 12.3 1.0
HG A:LEU104 3.3 12.1 1.0
HA2 A:GLY103 3.3 14.1 1.0
HB2 A:LEU104 3.3 12.7 1.0
HH2 A:TRP110 3.4 11.7 1.0
CA A:GLY103 3.5 14.1 1.0
CH2 A:TRP110 3.7 11.7 1.0
C A:GLY103 3.8 13.2 1.0
CB A:LEU104 3.9 12.7 1.0
CG A:LEU104 4.0 12.1 1.0
CG2 A:THR23 4.0 11.3 1.0
HD11 A:LEU104 4.1 14.0 1.0
CZ2 A:TRP110 4.1 13.2 1.0
HZ2 A:TRP110 4.1 13.2 1.0
CA A:LEU104 4.1 12.7 1.0
HG22 A:THR23 4.3 11.3 1.0
CZ3 A:TRP110 4.3 12.3 1.0
HG23 A:THR23 4.3 11.3 1.0
HZ3 A:TRP110 4.5 12.3 1.0
O A:HOH474 4.5 41.8 1.0
H A:THR105 4.5 13.5 1.0
CD1 A:LEU104 4.6 14.0 1.0
O A:HIS102 4.7 20.4 1.0
O A:HOH348 4.7 22.3 1.0
HA A:THR23 4.7 10.7 1.0
N A:GLY103 4.8 16.5 1.0
HB3 A:LEU104 4.8 12.7 1.0
HG23 A:THR105 4.8 20.3 1.0
HA A:LEU104 4.9 12.7 1.0
O A:HOH400 4.9 33.7 1.0
C A:LEU104 4.9 11.0 1.0
HD12 A:LEU104 5.0 14.0 1.0

Chlorine binding site 2 out of 4 in 6t5s

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Chlorine binding site 2 out of 4 in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:28.7
occ:1.00
 O A:HOH337 2.9 17.1 1.0
HB2 A:CYS126 2.9 16.0 1.0
O A:HOH477 3.0 26.0 1.0
O A:HOH356 3.1 15.9 1.0
HE A:ARG13 3.5 13.2 1.0
HG12 A:VAL9 3.8 10.0 1.0
CB A:CYS126 3.8 16.0 1.0
HH21 A:ARG13 3.9 15.3 1.0
HB3 A:CYS126 4.0 16.0 1.0
NE A:ARG13 4.0 13.2 1.0
OXT A:CYS126 4.3 23.4 1.0
C A:CYS126 4.3 19.3 1.0
H A:CYS126 4.3 13.3 1.0
NH2 A:ARG13 4.4 15.3 1.0
O A:VAL123 4.4 11.8 1.0
HG11 A:VAL9 4.4 10.0 1.0
HD2 A:ARG13 4.5 10.7 1.0
CZ A:ARG13 4.5 14.4 1.0
CG1 A:VAL9 4.6 10.0 1.0
CA A:CYS126 4.6 16.7 1.0
O A:CYS126 4.7 29.9 1.0
O A:HOH374 4.8 16.1 1.0
CD A:ARG13 4.8 10.7 1.0
O A:HOH500 4.8 39.9 1.0
N A:CYS126 4.9 13.3 1.0
HG13 A:VAL9 4.9 10.0 1.0
HH22 A:ARG13 5.0 15.3 1.0

Chlorine binding site 3 out of 4 in 6t5s

Go back to Chlorine Binding Sites List in 6t5s
Chlorine binding site 3 out of 4 in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:12.2
occ:1.00
 HE1 A:HIS15 2.8 11.3 1.0
O A:HOH329 3.0 17.2 1.0
O A:HOH408 3.2 12.8 1.0
CE1 A:HIS15 3.7 11.3 1.0
HG12 A:ILE11 3.8 11.6 1.0
HG23 A:ILE11 4.0 10.6 1.0
HE2 A:HIS15 4.4 10.5 0.0
NE2 A:HIS15 4.5 10.5 1.0
OE2 A:GLU88 4.6 12.0 1.0
CG1 A:ILE11 4.7 11.6 1.0
ND1 A:HIS15 4.7 11.0 1.0
HD13 A:ILE11 4.7 11.4 1.0
HA A:ILE11 4.8 10.4 1.0
HD1 A:HIS15 4.8 11.0 0.0
CG2 A:ILE11 4.8 10.6 1.0
HG22 A:ILE11 5.0 10.6 1.0

Chlorine binding site 4 out of 4 in 6t5s

Go back to Chlorine Binding Sites List in 6t5s
Chlorine binding site 4 out of 4 in the Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Apo Form of C-Type Lysozyme From the Upper Gastrointestinal Tract of Opisthocomus Hoatzin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:22.2
occ:1.00
 HH11 A:ARG13 2.3 14.1 1.0
HD3 A:ARG13 3.1 10.7 1.0
HG2 A:ARG13 3.1 11.7 1.0
NH1 A:ARG13 3.1 14.1 1.0
HB3 A:ARG13 3.2 9.5 1.0
O A:HOH383 3.3 11.8 1.0
HB2 A:GLU18 3.3 12.3 0.5
HB2 A:GLU18 3.4 9.0 0.5
HH12 A:ARG13 3.4 14.1 1.0
CG A:ARG13 3.6 11.7 1.0
HA A:ARG13 3.7 8.8 1.0
CD A:ARG13 3.8 10.7 1.0
HB3 A:GLU18 3.8 9.0 0.5
CB A:ARG13 3.8 9.5 1.0
HB3 A:GLU18 3.8 12.3 0.5
CB A:GLU18 4.0 9.0 0.5
HG13 A:ILE25 4.0 10.6 1.0
HG2 A:GLU18 4.0 10.4 0.5
CB A:GLU18 4.0 12.3 0.5
CA A:ARG13 4.2 8.8 1.0
CZ A:ARG13 4.2 14.4 1.0
HD12 A:ILE25 4.3 10.2 1.0
OE1 A:GLU18 4.4 28.4 0.5
HG2 A:GLU18 4.4 15.9 0.5
NE A:ARG13 4.5 13.2 1.0
HD2 A:ARG13 4.5 10.7 1.0
CG A:GLU18 4.5 10.4 0.5
O A:ARG13 4.5 10.5 1.0
HG3 A:ARG13 4.6 11.7 1.0
CG A:GLU18 4.6 15.9 0.5
H A:GLU18 4.7 10.8 0.5
H A:GLU18 4.7 10.1 0.5
HB2 A:ARG13 4.7 9.5 1.0
O A:HOH338 4.7 13.3 1.0
CG1 A:ILE25 4.8 10.6 1.0
C A:ARG13 4.8 9.9 1.0
O A:HOH405 4.8 33.4 1.0
HG12 A:ILE25 4.9 10.6 1.0
CD A:GLU18 4.9 23.6 0.5
CD1 A:ILE25 4.9 10.2 1.0

Reference:

E.J.Taylor, M.Skjot, L.K.Skov, M.Klausen, L.De Maria, G.P.Gippert, J.P.Turkenburg, G.J.Davies, K.S.Wilson. The C-Type Lysozyme From the Upper Gastrointestinal Tract Ofopisthocomus Hoatzin,the Stinkbird. Int J Mol Sci V. 20 2019.
ISSN: ESSN 1422-0067
PubMed: 31698762
DOI: 10.3390/IJMS20225531
Page generated: Mon Jul 29 15:17:23 2024

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