Chlorine in PDB 6t68: Crystal Structure of Trypanosoma Brucei MORN1
Protein crystallography data
The structure of Crystal Structure of Trypanosoma Brucei MORN1, PDB code: 6t68
was solved by
I.Grishkovskaya,
J.Kostan,
S.Sajko,
B.Morriswood,
K.Djinovic-Carugo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.14 /
2.54
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
192.878,
49.737,
41.984,
90.00,
97.54,
90.00
|
R / Rfree (%)
|
23.4 /
29.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Trypanosoma Brucei MORN1
(pdb code 6t68). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Trypanosoma Brucei MORN1, PDB code: 6t68:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6t68
Go back to
Chlorine Binding Sites List in 6t68
Chlorine binding site 1 out
of 5 in the Crystal Structure of Trypanosoma Brucei MORN1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Trypanosoma Brucei MORN1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:36.8
occ:1.00
|
N
|
A:ARG293
|
3.5
|
39.1
|
1.0
|
CA
|
A:ARG292
|
3.6
|
46.5
|
1.0
|
CA
|
A:GLY314
|
3.8
|
57.4
|
1.0
|
CB
|
A:ARG292
|
4.0
|
48.4
|
1.0
|
CG
|
A:ARG292
|
4.0
|
44.4
|
1.0
|
CZ3
|
A:TRP288
|
4.0
|
32.4
|
1.0
|
C
|
A:ARG292
|
4.1
|
43.5
|
1.0
|
CG
|
A:ARG293
|
4.1
|
37.8
|
1.0
|
O
|
A:ASP291
|
4.3
|
55.1
|
1.0
|
NE
|
A:ARG293
|
4.4
|
51.3
|
1.0
|
CB
|
A:ARG293
|
4.4
|
44.7
|
1.0
|
O
|
A:GLY314
|
4.5
|
62.5
|
1.0
|
CA
|
A:ARG293
|
4.6
|
38.8
|
1.0
|
CE3
|
A:TRP288
|
4.7
|
34.6
|
1.0
|
C
|
A:GLY314
|
4.7
|
54.0
|
1.0
|
CD
|
A:ARG293
|
4.8
|
41.2
|
1.0
|
N
|
A:GLY314
|
4.8
|
52.0
|
1.0
|
N
|
A:ARG292
|
4.8
|
50.9
|
1.0
|
CH2
|
A:TRP288
|
4.8
|
31.0
|
1.0
|
C
|
A:ASP291
|
5.0
|
57.3
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6t68
Go back to
Chlorine Binding Sites List in 6t68
Chlorine binding site 2 out
of 5 in the Crystal Structure of Trypanosoma Brucei MORN1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Trypanosoma Brucei MORN1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:40.6
occ:1.00
|
N
|
A:LYS316
|
3.4
|
52.9
|
1.0
|
CA
|
A:LYS315
|
3.7
|
49.6
|
1.0
|
CG
|
A:LYS316
|
4.0
|
49.8
|
1.0
|
NH2
|
A:ARG293
|
4.0
|
47.4
|
1.0
|
C
|
A:LYS315
|
4.1
|
48.1
|
1.0
|
CB
|
A:LYS315
|
4.1
|
49.1
|
1.0
|
CA
|
A:GLY337
|
4.1
|
61.0
|
1.0
|
O
|
A:HOH504
|
4.2
|
71.3
|
1.0
|
CB
|
A:LYS316
|
4.3
|
46.5
|
1.0
|
CD
|
A:LYS316
|
4.3
|
43.1
|
1.0
|
CA
|
A:LYS316
|
4.4
|
48.7
|
1.0
|
O
|
A:GLY314
|
4.5
|
62.5
|
1.0
|
CE
|
A:LYS316
|
4.6
|
48.1
|
1.0
|
O
|
A:GLY337
|
4.6
|
66.8
|
1.0
|
CG
|
A:LYS315
|
4.6
|
50.9
|
1.0
|
C
|
A:GLY337
|
4.9
|
61.0
|
1.0
|
N
|
A:LYS315
|
4.9
|
51.4
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6t68
Go back to
Chlorine Binding Sites List in 6t68
Chlorine binding site 3 out
of 5 in the Crystal Structure of Trypanosoma Brucei MORN1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Trypanosoma Brucei MORN1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:45.6
occ:1.00
|
N
|
B:LYS316
|
3.6
|
48.9
|
1.0
|
CA
|
B:LYS315
|
3.8
|
59.7
|
1.0
|
CG
|
B:LYS316
|
4.0
|
50.2
|
1.0
|
CB
|
B:LYS315
|
4.1
|
51.5
|
1.0
|
NH2
|
B:ARG293
|
4.2
|
60.2
|
1.0
|
C
|
B:LYS315
|
4.2
|
55.0
|
1.0
|
CG
|
B:LYS315
|
4.3
|
49.2
|
1.0
|
CA
|
B:GLY337
|
4.3
|
60.8
|
1.0
|
CD
|
B:LYS316
|
4.3
|
63.4
|
1.0
|
O
|
B:GLY314
|
4.4
|
58.5
|
1.0
|
CB
|
B:LYS316
|
4.4
|
53.0
|
1.0
|
CE
|
B:LYS316
|
4.6
|
70.1
|
1.0
|
CA
|
B:LYS316
|
4.6
|
55.1
|
1.0
|
O
|
B:GLY337
|
4.7
|
67.0
|
1.0
|
N
|
B:LYS315
|
4.9
|
57.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6t68
Go back to
Chlorine Binding Sites List in 6t68
Chlorine binding site 4 out
of 5 in the Crystal Structure of Trypanosoma Brucei MORN1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Trypanosoma Brucei MORN1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl402
b:51.9
occ:1.00
|
OD1
|
B:ASP326
|
3.4
|
86.6
|
1.0
|
NZ
|
A:LYS325
|
3.9
|
62.5
|
1.0
|
CA
|
B:ASP326
|
4.0
|
73.5
|
1.0
|
CE
|
B:LYS325
|
4.1
|
57.4
|
1.0
|
N
|
B:ASP326
|
4.1
|
83.4
|
1.0
|
CE
|
A:LYS325
|
4.2
|
77.4
|
1.0
|
CG
|
B:ASP326
|
4.3
|
92.5
|
1.0
|
C
|
B:LYS325
|
4.3
|
69.5
|
1.0
|
O
|
B:LYS325
|
4.4
|
69.2
|
1.0
|
CB
|
B:LYS325
|
4.6
|
77.3
|
1.0
|
CB
|
B:ASP326
|
4.7
|
77.6
|
1.0
|
NZ
|
B:LYS325
|
4.8
|
61.4
|
1.0
|
OD1
|
A:ASP326
|
5.0
|
1.0
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6t68
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Chlorine Binding Sites List in 6t68
Chlorine binding site 5 out
of 5 in the Crystal Structure of Trypanosoma Brucei MORN1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Trypanosoma Brucei MORN1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl403
b:48.4
occ:1.00
|
N
|
B:ARG293
|
3.1
|
40.7
|
1.0
|
CA
|
B:ARG292
|
3.5
|
55.6
|
1.0
|
CG
|
B:ARG293
|
3.6
|
55.4
|
1.0
|
NE
|
B:ARG293
|
3.6
|
55.1
|
1.0
|
CA
|
B:GLY314
|
3.6
|
50.5
|
1.0
|
C
|
B:ARG292
|
3.8
|
58.5
|
1.0
|
CB
|
B:ARG292
|
3.8
|
49.5
|
1.0
|
CG
|
B:ARG292
|
3.9
|
52.2
|
1.0
|
CB
|
B:ARG293
|
4.0
|
58.3
|
1.0
|
CD
|
B:ARG293
|
4.1
|
53.2
|
1.0
|
CA
|
B:ARG293
|
4.2
|
49.6
|
1.0
|
CZ3
|
B:TRP288
|
4.2
|
51.3
|
1.0
|
O
|
B:GLY314
|
4.2
|
58.5
|
1.0
|
CZ
|
B:ARG293
|
4.4
|
58.8
|
1.0
|
C
|
B:GLY314
|
4.4
|
63.6
|
1.0
|
O
|
B:ASP291
|
4.5
|
59.0
|
1.0
|
NH2
|
B:ARG293
|
4.6
|
60.2
|
1.0
|
N
|
B:GLY314
|
4.7
|
52.0
|
1.0
|
CH2
|
B:TRP288
|
4.7
|
45.0
|
1.0
|
CD
|
B:ARG292
|
4.8
|
66.0
|
1.0
|
N
|
B:ARG292
|
4.8
|
48.6
|
1.0
|
CE3
|
B:TRP288
|
4.9
|
45.8
|
1.0
|
|
Reference:
I.Grishkovskaya,
J.Kostan,
S.Sajko,
B.Morriswood,
K.Djinovic-Carugo.
Structures of Three Morn Repeat Proteins and A Re-Evaluation of the Proposed Lipid-Binding Properties of Morn Repeats. To Be Published.
Page generated: Mon Jul 29 15:18:21 2024
|