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Chlorine in PDB 6t86: Urocanate Reductase in Complex with Fad

Enzymatic activity of Urocanate Reductase in Complex with Fad

All present enzymatic activity of Urocanate Reductase in Complex with Fad:
1.3.99.33;

Protein crystallography data

The structure of Urocanate Reductase in Complex with Fad, PDB code: 6t86 was solved by R.Venskutonyte, K.Lindkvist-Petersson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.13 / 2.56
Space group P 6 2 2
Cell size a, b, c (Å), α, β, γ (°) 159.786, 159.786, 75.491, 90, 90, 120
R / Rfree (%) 17.5 / 23.2

Other elements in 6t86:

The structure of Urocanate Reductase in Complex with Fad also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Urocanate Reductase in Complex with Fad (pdb code 6t86). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Urocanate Reductase in Complex with Fad, PDB code: 6t86:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6t86

Go back to Chlorine Binding Sites List in 6t86
Chlorine binding site 1 out of 3 in the Urocanate Reductase in Complex with Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Urocanate Reductase in Complex with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:55.8
occ:1.00
N A:THR132 4.2 33.7 1.0
O A:GLU130 4.5 45.8 1.0
CB A:THR132 4.5 30.1 1.0
OG1 A:THR132 4.7 37.4 1.0
CA A:TYR131 4.8 35.1 1.0
O A:THR132 4.9 33.4 1.0
C A:TYR131 4.9 35.1 1.0
CA A:THR132 4.9 27.8 1.0

Chlorine binding site 2 out of 3 in 6t86

Go back to Chlorine Binding Sites List in 6t86
Chlorine binding site 2 out of 3 in the Urocanate Reductase in Complex with Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Urocanate Reductase in Complex with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:54.8
occ:1.00
O A:HOH837 3.0 32.6 1.0
N A:ASN366 3.2 37.1 1.0
O A:HOH869 3.3 41.4 1.0
CG A:LYS365 3.7 48.6 1.0
CA A:LYS365 4.0 39.1 1.0
CA A:ASN366 4.0 34.7 1.0
C A:LYS365 4.1 38.6 1.0
CB A:LYS365 4.4 41.8 1.0
OD1 A:ASN366 4.4 36.0 1.0
N A:MET367 4.8 36.5 1.0
CD A:LYS365 4.9 52.6 1.0
NZ A:LYS365 4.9 55.0 1.0
CE A:LYS365 4.9 53.5 1.0
O A:ALA364 4.9 41.6 1.0
CG A:ASN366 4.9 32.1 1.0
C A:ASN366 5.0 34.2 1.0

Chlorine binding site 3 out of 3 in 6t86

Go back to Chlorine Binding Sites List in 6t86
Chlorine binding site 3 out of 3 in the Urocanate Reductase in Complex with Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Urocanate Reductase in Complex with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:57.8
occ:1.00
O A:HOH776 2.8 31.1 1.0
OE2 A:GLU150 3.4 35.0 1.0
NE1 A:TRP228 3.5 25.7 1.0
CD1 A:TRP228 4.0 24.6 1.0
CD A:GLU150 4.1 32.7 1.0
OE1 A:GLU150 4.2 33.8 1.0
CB A:ALA153 4.3 30.3 1.0
CZ A:TYR232 4.3 29.2 1.0
CE1 A:TYR232 4.3 29.1 1.0
NH2 A:ARG574 4.4 26.0 1.0
CE2 A:TYR232 4.4 26.4 1.0
CD1 A:TYR232 4.4 29.6 1.0
CD2 A:TYR232 4.4 26.8 1.0
CG A:TYR232 4.4 28.2 1.0
CE2 A:TRP228 4.7 26.4 1.0
OH A:TYR232 4.9 35.1 1.0

Reference:

R.Venskutonyte, A.Koh, M.T.Khan, F.Backhed, K.Lindkvist-Petersson. Urocanate Reductase: Structural Characterization of A Microbial Enzyme Producing Imidazole Propionate To Be Published.
Page generated: Mon Jul 29 15:19:50 2024

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