Chlorine in PDB 6toj: Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A

The structure of Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A, PDB code: 6toj was solved by M.J.Rodrigues, Y.-V.Le Bihan, R.L.M.Van Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.62 / 1.85
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	66.999, 66.999, 166.730, 90.00, 90.00, 120.00
R / Rfree (%)	18.5 / 20.5

The binding sites of Chlorine atom in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A (pdb code 6toj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A, PDB code: 6toj:

Chlorine binding site 1 out of 1 in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 17A within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:51.5 occ:1.00 CL A:NQQ201 0.0 51.5 1.0 C15 A:NQQ201 1.7 40.8 1.0 N3 A:NQQ201 2.6 41.5 1.0 C16 A:NQQ201 2.7 32.5 1.0 C17 A:NQQ201 3.0 30.4 1.0 O A:HOH353 3.6 32.9 0.6 N4 A:NQQ201 3.7 27.3 1.0 C14 A:NQQ201 3.8 41.5 1.0 CE1 A:TYR58 3.9 36.7 1.0 C12 A:NQQ201 4.0 33.3 1.0 C13 A:NQQ201 4.4 38.1 1.0 CD1 A:TYR58 4.7 36.5 1.0 OH A:TYR58 4.7 48.5 1.0 CZ A:TYR58 4.8 46.4 1.0

B.R.Bellenie, K.J.Cheung, A.Varela, O.A.Pierrat, G.W.Collie, G.M.Box, M.D.Bright, S.Gowan, A.Hayes, M.J.Rodrigues, K.N.Shetty, M.Carter, O.A.Davis, A.T.Henley, P.Innocenti, L.D.Johnson, M.Liu, S.De Klerk, Y.V.Le Bihan, M.G.Lloyd, P.C.Mcandrew, E.Shehu, R.Talbot, H.L.Woodward, R.Burke, V.Kirkin, R.L.M.Van Montfort, F.I.Raynaud, O.W.Rossanese, S.Hoelder. Achievingin Vivotarget Depletion Through the Discovery and Optimization of Benzimidazolone BCL6 Degraders. J.Med.Chem. 2020.
ISSN: ISSN 0022-2623
PubMed: 32275432
DOI: 10.1021/ACS.JMEDCHEM.9B02076