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Chlorine in PDB 6tqb: X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif

Enzymatic activity of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif

All present enzymatic activity of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif:
2.3.2.27;

Protein crystallography data

The structure of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif, PDB code: 6tqb was solved by O.Binas, J.-N.Tants, S.A.Peter, R.Janowski, E.Davydova, J.Braun, D.Niessing, H.Schwalbe, J.E.Weigand, A.Schlundt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.08 / 1.60
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.990, 86.990, 72.990, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 19.7

Other elements in 6tqb:

The structure of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif (pdb code 6tqb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif, PDB code: 6tqb:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6tqb

Go back to Chlorine Binding Sites List in 6tqb
Chlorine binding site 1 out of 4 in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:63.0
occ:0.60
 CL A:CL606 0.0 63.0 0.6
CL A:CL606 1.8 49.6 0.4
O A:HOH820 3.7 53.0 1.0
O2 A:EDO601 3.9 43.2 1.0
O A:ILE298 4.2 27.2 1.0
NH1 A:ARG297 4.2 66.0 1.0
NE A:ARG297 4.4 54.2 1.0
CZ A:ARG297 4.4 67.8 1.0
CD A:PRO300 4.5 28.4 1.0
CG2 A:ILE321 4.6 28.6 1.0
CA A:ALA299 4.6 26.2 1.0
CD1 A:ILE321 4.7 24.6 1.0
CG A:ARG297 4.8 36.8 1.0
C A:ILE298 4.9 24.7 1.0
C2 A:EDO601 4.9 38.0 1.0

Chlorine binding site 2 out of 4 in 6tqb

Go back to Chlorine Binding Sites List in 6tqb
Chlorine binding site 2 out of 4 in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:49.6
occ:0.40
 CL A:CL606 0.0 49.6 0.4
CL A:CL606 1.8 63.0 0.6
CA A:ALA299 3.7 26.2 1.0
NH1 A:ARG297 3.9 66.0 1.0
CB A:ALA299 4.0 29.6 1.0
CZ A:ARG297 4.0 67.8 1.0
CD A:PRO300 4.1 28.4 1.0
O A:ILE298 4.2 27.2 1.0
N A:ALA299 4.3 26.6 1.0
NH2 A:ARG297 4.3 75.6 1.0
NE A:ARG297 4.4 54.2 1.0
C A:ILE298 4.5 24.7 1.0
CG A:ARG297 4.7 36.8 1.0
O A:HOH820 4.8 53.0 1.0
C A:ALA299 4.9 25.5 1.0
N A:PRO300 5.0 28.0 1.0

Chlorine binding site 3 out of 4 in 6tqb

Go back to Chlorine Binding Sites List in 6tqb
Chlorine binding site 3 out of 4 in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl105

b:56.5
occ:0.50
 CL B:CL105 0.0 56.5 0.5
CL B:CL105 2.0 53.9 0.5
N7 B:A7 2.5 21.0 0.6
O B:HOH235 2.9 32.9 1.0
N7 B:A6 3.0 29.2 0.6
N7 B:A7 3.1 18.2 0.4
C8 B:A6 3.2 28.0 0.6
N6 B:A7 3.3 17.4 0.4
C8 B:A7 3.4 21.4 0.6
C5 B:A7 3.4 19.9 0.6
C5 B:A6 3.4 26.1 0.6
N6 B:A7 3.5 23.0 0.6
O B:HOH221 3.7 51.3 1.0
N7 B:A6 3.8 26.1 0.4
C6 B:A7 3.9 22.6 0.6
C5 B:A7 3.9 16.9 0.4
N9 B:A6 3.9 26.1 0.6
C4 B:A6 4.0 25.6 0.6
C6 B:A7 4.0 17.5 0.4
C6 B:A6 4.2 26.6 0.6
CE1 A:HIS244 4.2 29.6 1.0
C8 B:A7 4.3 19.5 0.4
OP2 B:A7 4.3 24.8 0.6
C5 B:A6 4.3 23.4 0.4
C8 B:A6 4.4 21.9 0.4
N6 B:A6 4.4 26.1 0.6
CG2 A:THR240 4.5 24.0 1.0
N6 B:A6 4.5 23.2 0.4
C4 B:A7 4.6 20.2 0.6
N9 B:A7 4.6 21.1 0.6
C6 B:A6 4.6 23.1 0.4
C3' B:A6 4.7 27.6 0.6
O4 B:U8 4.7 25.5 1.0
O5' B:A6 4.7 28.1 0.6
O A:HOH834 4.7 56.3 1.0
OP2 B:A6 4.8 34.8 0.6
O B:HOH223 4.8 59.5 1.0
O A:HOH755 4.9 46.4 1.0
O B:HOH279 4.9 71.5 1.0
NE2 A:HIS244 4.9 27.6 1.0
C1' B:A6 4.9 27.1 0.6
C2' B:A6 5.0 26.3 0.6

Chlorine binding site 4 out of 4 in 6tqb

Go back to Chlorine Binding Sites List in 6tqb
Chlorine binding site 4 out of 4 in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl105

b:53.9
occ:0.50
 CL B:CL105 0.0 53.9 0.5
CL B:CL105 2.0 56.5 0.5
OP2 B:A7 2.5 24.8 0.6
O B:HOH221 3.0 51.3 1.0
N7 B:A7 3.3 21.0 0.6
CE1 A:HIS244 3.4 29.6 1.0
OP2 B:A7 3.4 17.1 0.4
O B:HOH235 3.6 32.9 1.0
CG2 A:THR240 3.6 24.0 1.0
C3' B:A6 3.7 27.6 0.6
N7 B:A7 3.7 18.2 0.4
C8 B:A7 3.7 21.4 0.6
O5' B:A6 3.8 28.1 0.6
P B:A7 3.8 25.2 0.6
C8 B:A6 3.8 28.0 0.6
ND1 A:HIS244 4.1 28.9 1.0
O3' B:A6 4.2 24.7 0.6
N7 B:A6 4.2 29.2 0.6
O5' B:A7 4.2 23.1 0.6
OP2 B:A6 4.2 34.8 0.6
C8 B:A7 4.3 19.5 0.4
N9 B:A6 4.3 26.1 0.6
NE2 A:HIS244 4.5 27.6 1.0
C2' B:A6 4.5 26.3 0.6
OE1 A:GLN193 4.5 24.6 0.5
N7 B:A6 4.5 26.1 0.4
P B:A6 4.6 35.9 0.6
C5' B:A6 4.6 30.6 0.6
C4' B:A6 4.6 27.8 0.6
C8 B:A6 4.6 21.9 0.4
C5 B:A7 4.6 19.9 0.6
O B:HOH267 4.7 31.7 0.5
OP2 B:A6 4.8 36.7 0.4
C5 B:A6 4.8 26.1 0.6
CB A:THR240 4.8 23.0 1.0
C1' B:A6 4.9 27.1 0.6
O5' B:A6 4.9 29.9 0.4
C5 B:A7 4.9 16.9 0.4
P B:A7 4.9 18.4 0.4
C4 B:A6 4.9 25.6 0.6
O4' B:A6 5.0 29.8 0.6

Reference:

R.Janowski, E.Davydova, A.Schlundt, D.Niessing. Structural Basis For the Recognition of (Linear and) Non-Linear Au-Rich Elements By Roquin To Be Published.
Page generated: Mon Jul 29 15:33:31 2024

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