Chlorine in PDB 6tvy: Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device

Enzymatic activity of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device

All present enzymatic activity of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device, PDB code: 6tvy was solved by R.De Wijn, K.Rollet, L.Coudray, A.G.Mcewen, B.Lorber, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.24 / 1.51
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.810, 78.810, 38.332, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 17.5

Other elements in 6tvy:

The structure of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device also contains other interesting chemical elements:

Terbium (Tb) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device (pdb code 6tvy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device, PDB code: 6tvy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6tvy

Go back to Chlorine Binding Sites List in 6tvy
Chlorine binding site 1 out of 2 in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:49.3
occ:1.00
OH A:TYR23 2.7 22.7 1.0
O A:HOH403 3.4 38.2 1.0
CZ A:TYR23 3.5 21.4 1.0
CE2 A:TYR23 3.6 19.9 1.0
CA A:GLY104 4.0 21.9 1.0
O A:ARG21 4.6 28.3 1.0
N A:GLY104 4.6 23.2 1.0
CE1 A:TYR23 4.8 20.5 1.0
CD2 A:TYR23 4.8 18.4 1.0

Chlorine binding site 2 out of 2 in 6tvy

Go back to Chlorine Binding Sites List in 6tvy
Chlorine binding site 2 out of 2 in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:44.0
occ:1.00
OG A:SER24 3.0 27.4 1.0
N A:GLY26 3.0 22.0 1.0
CB A:SER24 3.5 24.3 1.0
CA A:GLY26 3.5 20.9 1.0
CA A:GLN121 3.7 35.4 1.0
CD1 A:ILE124 3.7 37.6 1.0
CB A:GLN121 4.0 44.6 1.0
CG A:GLN121 4.0 55.3 1.0
N A:LEU25 4.0 21.4 1.0
N A:GLN121 4.1 31.5 1.0
C A:SER24 4.2 21.4 1.0
C A:LEU25 4.2 20.5 1.0
CG1 A:ILE124 4.3 34.4 1.0
O A:VAL120 4.4 28.5 1.0
C A:VAL120 4.4 29.6 1.0
CA A:SER24 4.5 22.2 1.0
CG2 A:VAL120 4.5 33.6 1.0
C A:GLY26 4.5 20.4 1.0
CA A:LEU25 4.6 21.0 1.0
CD A:GLN121 4.6 63.9 1.0
O A:SER24 4.6 22.4 1.0
N A:ASN27 4.7 18.4 1.0
NE2 A:GLN121 4.8 66.2 1.0
C A:GLN121 4.9 34.7 1.0
CB A:LEU25 4.9 23.3 1.0

Reference:

R.De Wijn, K.Rollet, S.Engilberge, A.G.Mcewen, O.Hennig, H.Betat, M.Moerl, F.Riobe, O.Maury, E.Girard, P.Benas, B.Lorber, C.Sauter. Monitoring the Production of High Diffraction-Quality Crystals of Two Enzymes in Real Time Using in Situ Dynamic Light Scattering Crystals 2020.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST10020065
Page generated: Thu Dec 17 10:46:30 2020

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